The genetic architecture of nodal root number in maize

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies

(2016) Xiaolei Liu et al.   PLoS Genetics

Evolution of US maize (Zea mays L.) root architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress

(2015) L. M. York et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ensembl Genomes 2016: more genomes, more complexity

(2015) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

Next generation shovelomics: set up a tent and REST

(2015) Tino Colombi et al.   PLANT AND SOIL

Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics

(2015) Abhiram Das et al.   Plant Methods

Lateral Organ Boundaries Domain16and18Act Downstream of the AUXIN1 and LIKE-AUXIN3 Auxin Influx Carriers to Control Lateral Root Development in Arabidopsis

(2015) Han Woo Lee et al.   PLANT PHYSIOLOGY

Arabidopsis AIR12 influences root development

(2015) Shawn W. Gibson et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice

(2014) He Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

QTL mapping and phenotypic variation for root architectural traits in maize (Zea mays L.)

(2014) Amy L. Burton et al.   THEORETICAL AND APPLIED GENETICS

The BIG gene is required for auxin-mediated organ growth in Arabidopsis

(2013) Xiaola Guo et al.   PLANTA

CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize

(2013) Q. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lateral root development in Arabidopsis: fifty shades of auxin

(2013) Julien Lavenus et al.   TRENDS IN PLANT SCIENCE

From Many, One: Genetic Control of Prolificacy during Maize Domestication

(2013) David M. Wills et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Differential analysis of gene regulation at transcript resolution with RNA-seq

(2012) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Parallel domestication of the Shattering1 genes in cereals

(2012) Zhongwei Lin et al.   NATURE GENETICS

Aberrant temporal growth pattern and morphology of root and shoot caused by a defective circadian clock inArabidopsis thaliana

(2012) Tom Ruts et al.   PLANT JOURNAL

ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize

(2012) H.-Y. Hung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform

(2011) R. T. Clark et al.   PLANT PHYSIOLOGY

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum

(2011) R. L. Murphy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

R/qtl: high-throughput multiple QTL mapping: Fig. 1.

(2010) Danny Arends et al.   BIOINFORMATICS

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

Genetic and genomic dissection of maize root development and architecture

(2009) Frank Hochholdinger et al.   CURRENT OPINION IN PLANT BIOLOGY

DART: a software to analyse root system architecture and development from captured images

(2009) Jacques Le Bot et al.   PLANT AND SOIL

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS

Ethylene regulates lateral root formation and auxin transport inArabidopsis thaliana

(2008) Sangeeta Negi et al.   PLANT JOURNAL

Receptor-Like Kinase ACR4 Restricts Formative Cell Divisions in the Arabidopsis Root

(2008) I. De Smet et al.   SCIENCE