The pomegranate (Punica granatum L.) genome provides insights into fruit quality and ovule developmental biology

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Comparison of Different Extraction Methods in the Analysis of Volatile Compounds in Pomegranate Juice

(2016) Zhiying Yi et al.   Food Analytical Methods

Divergence times, historical biogeography, and shifts in speciation rates of Myrtales

(2016) Brent A. Berger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Near-optimal probabilistic RNA-seq quantification

(2016) Nicolas L Bray et al.   NATURE BIOTECHNOLOGY

LcGST4 is an anthocyanin-related glutathione S-transferase gene in Litchi chinensis Sonn.

(2016) Bing Hu et al.   PLANT CELL REPORTS

Two UGT84 Family Glycosyltransferases Catalyze a Critical Reaction of Hydrolyzable Tannin Biosynthesis in Pomegranate (Punica granatum)

(2016) Nadia N. Ono et al.   PLoS One

NxTrim: optimized trimming of Illumina mate pair reads: Table 1.

(2015) Jared O’Connell et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The octopus genome and the evolution of cephalopod neural and morphological novelties

(2015) Caroline B. Albertin et al.   NATURE

Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales

(2015) Samuel F. Brockington et al.   NEW PHYTOLOGIST

Molecular genetics of blood-fleshed peach reveals activation of anthocyanin biosynthesis by NAC transcription factors

(2015) Hui Zhou et al.   PLANT JOURNAL

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

A "White" Anthocyanin-less Pomegranate (Punica granatum L.) Caused by an Insertion in the Coding Region of the Leucoanthocyanidin Dioxygenase (LDOX; ANS) Gene

(2015) Zohar Ben-Simhon et al.   PLoS One

Ovary, Fruit, and Seed Morphology of the Lythraceae

(2014) Shirley A. Graham et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

The genome of Eucalyptus grandis

(2014) Alexander A. Myburg et al.   NATURE

The InterPro protein families database: the classification resource after 15 years

(2014) Alex Mitchell et al.   NUCLEIC ACIDS RESEARCH

AnO-methyltransferase modifies accumulation of methylated anthocyanins in seedlings of tomato

(2014) Maria Victoria Gomez Roldan et al.   PLANT JOURNAL

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Gamete fertility and ovule number variation in selfed reciprocal F1 hybrid triploid plants are heritable and display epigenetic parent-of-origin effects

(2013) Dorota Duszynska et al.   NEW PHYTOLOGIST

Pomegranate biology and biotechnology: A review

(2013) Jaime A. Teixeira da Silva et al.   SCIENTIA HORTICULTURAE

New insights into the regulation of anthocyanin biosynthesis in fruits

(2013) Laura Jaakola   TRENDS IN PLANT SCIENCE

The Shikimate Pathway and Aromatic Amino Acid Biosynthesis in Plants

(2012) Hiroshi Maeda et al.   Annual Review of Plant Biology

The draft genome of sweet orange (Citrus sinensis)

(2012) Qiang Xu et al.   NATURE GENETICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Pomegranate as a Functional Food and Nutraceutical Source

(2012) Suzanne D. Johanningsmeier et al.   Annual Review of Food Science and Technology

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Exploring the Transcriptome Landscape of Pomegranate Fruit Peel for Natural Product Biosynthetic Gene and SSR Marker DiscoveryF

(2011) Nadia Nicole Ono et al.   Journal of Integrative Plant Biology

Recent advances on the regulation of anthocyanin synthesis in reproductive organs

(2011) Katia Petroni et al.   PLANT SCIENCE

A pomegranate (Punica granatum L.) WD40-repeat gene is a functional homologue of Arabidopsis TTG1 and is involved in the regulation of anthocyanin biosynthesis during pomegranate fruit development

(2011) Zohar Ben-Simhon et al.   PLANTA

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Draft genome sequence of the oilseed species Ricinus communis

(2010) Agnes P Chan et al.   NATURE BIOTECHNOLOGY

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

(2010) Y. Han et al.   NUCLEIC ACIDS RESEARCH

Identification and characterisation of F3GT1 and F3GGT1, two glycosyltransferases responsible for anthocyanin biosynthesis in red-fleshed kiwifruit (Actinidia chinensis )

(2010) Mirco Montefiori et al.   PLANT JOURNAL

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Genetic diversity in inter-simple sequence repeat profiles across natural populations of Indian pomegranate (Punica granatum L.)

(2009) D. Narzary et al.   PLANT BIOLOGY

ALLPATHS: De novo assembly of whole-genome shotgun microreads

(2008) J. Butler et al.   GENOME RESEARCH

Arabidopsis ovule development and its evolutionary conservation

(2008) Lucia Colombo et al.   TRENDS IN PLANT SCIENCE