HighpCO2affects body size, but not gene expression in larvae of the California mussel (Mytilus californianus)

Genomics Are Transforming Our Understanding of Responses to Climate Change

(2015) Jonathon H. Stillman et al.   BIOSCIENCE

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Complex Environmental Forcing across the Biogeographical Range of Coral Populations

(2015) Emily B. Rivest et al.   PLoS One

Six Month In Situ High-Resolution Carbonate Chemistry and Temperature Study on a Coral Reef Flat Reveals Asynchronous pH and Temperature Anomalies

(2015) David I. Kline et al.   PLoS One

Ocean Acidification Has Multiple Modes of Action on Bivalve Larvae

(2015) George G. Waldbusser et al.   PLoS One

Gene expression profiling in gills of the great spider crab Hyas araneus in response to ocean acidification and warming

(2014) Lars Harms et al.   BMC GENOMICS

Thermal Stress Triggers Broad Pocillopora damicornis Transcriptomic Remodeling, while Vibrio coralliilyticus Infection Induces a More Targeted Immuno-Suppression Response

(2014) Jeremie Vidal-Dupiol et al.   PLoS One

Gene expression changes in the coccolithophore Emiliania huxleyi after 500 generations of selection to ocean acidification

(2014) K. T. Lohbeck et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression

(2013) Michele A. Busby et al.   BIOINFORMATICS

A developmental and energetic basis linking larval oyster shell formation to acidification sensitivity

(2013) George G. Waldbusser et al.   GEOPHYSICAL RESEARCH LETTERS

Natural variation and the capacity to adapt to ocean acidification in the keystone sea urchinStrongylocentrotus purpuratus

(2013) Morgan W. Kelly et al.   GLOBAL CHANGE BIOLOGY

Transcriptomic responses to ocean acidification in larval sea urchins from a naturally variable pH environment

(2013) Tyler G. Evans et al.   MOLECULAR ECOLOGY

Emiliania huxleyi increases calcification but not expression of calcification-related genes in long-term exposure to elevated temperature and pCO2

(2013) I. Benner et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Temperature and CO2 additively regulate physiology, morphology and genomic responses of larval sea urchins, Strongylocentrotus purpuratus

(2013) J. L. Padilla-Gamino et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Natural intrusions of hypoxic, low pH water into nearshore marine environments on the California coast

(2012) J. Ashley T. Booth et al.   CONTINENTAL SHELF RESEARCH

Persistent carry-over effects of planktonic exposure to ocean acidification in the Olympia oyster

(2012) Annaliese Hettinger et al.   ECOLOGY

Adaptation and the physiology of ocean acidification

(2012) Morgan W. Kelly et al.   FUNCTIONAL ECOLOGY

Marine invertebrate skeleton size varies with latitude, temperature and carbonate saturation: implications for global change and ocean acidification

(2012) Sue-Ann Watson et al.   GLOBAL CHANGE BIOLOGY

Food availability outweighs ocean acidification effects in juvenileMytilus edulis: laboratory and field experiments

(2012) Jörn Thomsen et al.   GLOBAL CHANGE BIOLOGY

Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

(2012) A. Whitehead   JOURNAL OF EXPERIMENTAL BIOLOGY

Ocean acidification reduces biomineralization-related gene expression in the sea urchin, Hemicentrotus pulcherrimus

(2012) Haruko Kurihara et al.   MARINE BIOLOGY

Analysis of Pacific oyster larval proteome and its response to high-CO2

(2012) R. Dineshram et al.   MARINE POLLUTION BULLETIN

Whole Transcriptome Analysis of the CoralAcropora milleporaReveals Complex Responses to CO2-driven Acidification during the Initiation of Calcification

(2012) A. MOYA et al.   MOLECULAR ECOLOGY

Defining the limits of physiological plasticity: how gene expression can assess and predict the consequences of ocean change

(2012) T. G. Evans et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Energetic Plasticity Underlies a Variable Response to Ocean Acidification in the Pteropod, Limacina helicina antarctica

(2012) Brad A. Seibel et al.   PLoS One

Rapid Progression of Ocean Acidification in the California Current System

(2012) N. Gruber et al.   SCIENCE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

CO2 induced seawater acidification impacts sea urchin larval development II: Gene expression patterns in pluteus larvae

(2011) M. Stumpp et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Functional impacts of ocean acidification in an ecologically critical foundation species

(2011) B. Gaylord et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The ocean acidification seascape and its relationship to the performance of calcifying marine invertebrates: Laboratory experiments on the development of urchin larvae framed by environmentally-relevant pCO2/pH

(2011) Pauline C. Yu et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions

(2011) ROBERT W. CHAPMAN et al.   MOLECULAR ECOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq

(2011) P. J. Shepard et al.   RNA

Shrinking body size as an ecological response to climate change

(2011) Jennifer A. Sheridan et al.   Nature Climate Change

The Effect of Ocean Acidification on Calcifying Organisms in Marine Ecosystems: An Organism-to-Ecosystem Perspective

(2010) Gretchen E. Hofmann et al.   Annual Review of Ecology Evolution and Systematics

Size-Specific Predation on Marine Invertebrate Larvae

(2010) Jonathan D. Allen   BIOLOGICAL BULLETIN

Meta-analysis reveals negative yet variable effects of ocean acidification on marine organisms

(2010) Kristy J. Kroeker et al.   ECOLOGY LETTERS

A laboratory-based, experimental system for the study of ocean acidification effects on marine invertebrate larvae

(2010) Nann A. Fangue et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Impact of Ocean Acidification on Energy Metabolism of Oyster, Crassostrea gigas—Changes in Metabolic Pathways and Thermal Response

(2010) Gisela Lannig et al.   Marine Drugs

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Near-future level of CO2-driven ocean acidification radically affects larval survival and development in the brittlestar Ophiothrix fragilis

(2008) S Dupont et al.   MARINE ECOLOGY PROGRESS SERIES

Ecosystem effects of ocean acidification in times of ocean warming: a physiologist’s view

(2008) H Pörtner   MARINE ECOLOGY PROGRESS SERIES