The regulon of the RNA chaperone CspA and its auto-regulation in Staphylococcus aureus

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

(2017) Yanjie Chao et al.   MOLECULAR CELL

RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE

(2017) Charlotte Michaux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrated genome browser: visual analytics platform for genomics

(2016) Nowlan H. Freese et al.   BIOINFORMATICS

Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinkingin vivo

(2016) Erik Holmqvist et al.   EMBO JOURNAL

Ribosome hibernation factor promotesStaphylococcalsurvival and differentially represses translation

(2016) Arnab Basu et al.   NUCLEIC ACIDS RESEARCH

Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

(2016) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

(2016) Alexandre Smirnov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Staphylococcus aureus Infections: Epidemiology, Pathophysiology, Clinical Manifestations, and Management

(2015) Steven Y. C. Tong et al.   CLINICAL MICROBIOLOGY REVIEWS

Role of csp genes in NaCl, pH, and ethanol stress response and motility in Clostridium botulinum ATCC 3502

(2015) Yağmur Derman et al.   FOOD MICROBIOLOGY

Model Uracil-Rich RNAs and Membrane Protein mRNAs Interact Specifically with Cold Shock Proteins in Escherichia coli

(2015) Daniel Benhalevy et al.   PLoS One

RNA Degradation inStaphylococcus aureus: Diversity of Ribonucleases and Their Impact

(2015) Rémy A. Bonnin et al.   International Journal of Genomics

Identification and characterization of an operon, msaABCR, that controls virulence and biofilm development in Staphylococcus aureus

(2014) Gyan S Sahukhal et al.   BMC MICROBIOLOGY

Expression of csp genes in E. coli K-12 in defined rich and defined minimal media during normal growth, and after cold-shock

(2014) Tiffaney R. Czapski et al.   GENE

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

(2014) C. Pop et al.   Molecular Systems Biology

SMART: recent updates, new developments and status in 2015

(2014) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Sequence selectivity of macrolide-induced translational attenuation

(2014) A. R. Davis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural and Dynamic Features of Cold-Shock Proteins of Listeria monocytogenes, a Psychrophilic Bacterium

(2013) Juho Lee et al.   BIOCHEMISTRY

Association of RNAs with Bacillus subtilis Hfq

(2013) Michael Dambach et al.   PLoS One

Base Pairing Interaction between 5′- and 3′-UTRs Controls icaR mRNA Translation in Staphylococcus aureus

(2013) Igor Ruiz de los Mozos et al.   PLoS Genetics

Wavelet-based detection of transcriptional activity on a novel Staphylococcus aureus tiling microarray

(2012) Víctor Segura et al.   BMC BIOINFORMATICS

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

A non-cold-inducible cold shock protein homolog mainly contributes to translational control under optimal growth conditions

(2012) Toshiko Tanaka et al.   FEBS Journal

CspR, a Cold Shock RNA-Binding Protein Involved in the Long-Term Survival and the Virulence of Enterococcus faecalis

(2012) C. Michaux et al.   JOURNAL OF BACTERIOLOGY

Global Regulatory Functions of the Staphylococcus aureus Endoribonuclease III in Gene Expression

(2012) Efthimia Lioliou et al.   PLoS Genetics

Staphylococcal response to oxidative stress

(2012) Rosmarie Gaupp et al.   Frontiers in Cellular and Infection Microbiology

Genome-wide antisense transcription drives mRNA processing in bacteria

(2011) I. Lasa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA remodeling and gene regulation by cold shock proteins

(2011) Sangita Phadtare et al.   RNA Biology

RNA single strands bind to a conserved surface of the major cold shock protein in crystals and solution

(2011) R. Sachs et al.   RNA

Altered Growth, Pigmentation, and Antimicrobial Susceptibility Properties of Staphylococcus aureus Due to Loss of the Major Cold Shock Gene cspB

(2010) B. D. Duval et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

ChIP on Chip: surprising results are often artifacts

(2010) Torsten Waldminghaus et al.   BMC GENOMICS

Reduced Host Cell Invasiveness and Oxidative Stress Tolerance in Double and Triple csp Gene Family Deletion Mutants of Listeria monocytogenes

(2010) Chantal Loepfe et al.   Foodborne Pathogens and Disease

The cspA mRNA Is a Thermosensor that Modulates Translation of the Cold-Shock Protein CspA

(2010) Anna Maria Giuliodori et al.   MOLECULAR CELL

Role of Cold Shock Proteins in Growth of Listeria monocytogenes under Cold and Osmotic Stress Conditions

(2009) B. Schmid et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Coding-Sequence Determinants of Gene Expression in Escherichia coli

(2009) G. Kudla et al.   SCIENCE

RNA-binding proteins and post-transcriptional gene regulation

(2008) Tina Glisovic et al.   FEBS LETTERS

Comparative LC-MS: A landscape of peaks and valleys

(2008) Antoine H. P. America et al.   PROTEOMICS

A Cholesterol Biosynthesis Inhibitor Blocks Staphylococcus aureus Virulence

(2008) C.-I Liu et al.   SCIENCE

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics