Eukaryotic translational termination efficiency is influenced by the 3′ nucleotides within the ribosomal mRNA channel

Selective forces and mutational biases drive stop codon usage in the human genome: a comparison with sense codon usage

(2016) Edoardo Trotta   BMC GENOMICS

Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes

(2016) Sichen Shao et al.   CELL

Olfactory receptor pseudo-pseudogenes

(2016) Lucia L. Prieto-Godino et al.   NATURE

RNA helicase DDX19 stabilizes ribosomal elongation and termination complexes

(2016) Tatiana Mikhailova et al.   NUCLEIC ACIDS RESEARCH

Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3′UTRs In Vivo

(2015) David J. Young et al.   CELL

Structural basis for stop codon recognition in eukaryotes

(2015) Alan Brown et al.   NATURE

Translation initiation factor eIF3 promotes programmed stop codon readthrough

(2015) Petra Beznosková et al.   NUCLEIC ACIDS RESEARCH

Structure of a human translation termination complex

(2015) Sarah Matheisl et al.   NUCLEIC ACIDS RESEARCH

Nonsense suppression by near-cognate tRNAs employs alternative base pairing at codon positions 1 and 3

(2015) Bijoyita Roy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Highly Conserved Codon following the Slippery Sequence Supports −1 Frameshift Efficiency at the HIV-1 Frameshift Site

(2015) Suneeth F. Mathew et al.   PLoS One

Optimal Translational Termination Requires C4 Lysyl Hydroxylation of eRF1

(2014) Tianshu Feng et al.   MOLECULAR CELL

Evidence of efficient stop codon readthrough in four mammalian genes

(2014) Gary Loughran et al.   NUCLEIC ACIDS RESEARCH

New insights into the incorporation of natural suppressor tRNAs at stop codons in Saccharomyces cerevisiae

(2014) Sandra Blanchet et al.   NUCLEIC ACIDS RESEARCH

Hydroxylation of the eukaryotic ribosomal decoding center affects translational accuracy

(2014) C. Loenarz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations

(2014) Egor Svidritskiy et al.   STRUCTURE

Cryoelectron Microscopic Structures of Eukaryotic Translation Termination Complexes Containing eRF1-eRF3 or eRF1-ABCE1

(2014) Anne Preis et al.   Cell Reports

Ribosomal Readthrough at a Short UGA Stop Codon Context Triggers Dual Localization of Metabolic Enzymes in Fungi and Animals

(2014) Alina C. Stiebler et al.   PLoS Genetics

Peroxisomal lactate dehydrogenase is generated by translational readthrough in mammals

(2014) Fabian Schueren et al.   eLife

Structures of the human and Drosophila 80S ribosome

(2013) Andreas M. Anger et al.   NATURE

Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster

(2013) Joshua G Dunn et al.   eLife

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

(2012) Nicholas T Ingolia et al.   Nature Protocols

A novel hybrid gene prediction method employing protein multiple sequence alignments

(2011) Oliver Keller et al.   BIOINFORMATICS

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

Evidence of abundant stop codon readthrough in Drosophila and other metazoa

(2011) I. Jungreis et al.   GENOME RESEARCH

Efficiency of translation termination in humans is highly dependent upon nucleotides in the neighbourhood of a (premature) termination codon

(2011) F. Pacho et al.   JOURNAL OF MEDICAL GENETICS

Stimulation of stop codon readthrough: frequent presence of an extended 3′ RNA structural element

(2011) Andrew E. Firth et al.   NUCLEIC ACIDS RESEARCH

Structural and functional analysis of Nro1/Ett1: a protein involved in translation termination in S. cerevisiae and in O2-mediated gene control in S. pombe

(2011) D. Rispal et al.   RNA

The Structure of the Eukaryotic Ribosome at 3.0 A Resolution

(2011) A. Ben-Shem et al.   SCIENCE

The iron–sulphur protein RNase L inhibitor functions in translation termination

(2010) Sohail Khoshnevis et al.   EMBO REPORTS

Structural and Functional Insights intoSaccharomyces cerevisiaeTpa1, a Putative Prolylhydroxylase Influencing Translation Termination and Transcription

(2010) Julien Henri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural rearrangements of the ribosome at the tRNA proofreading step

(2010) Lasse Jenner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The codon specificity of eubacterial release factors is determined by the sequence and size of the recognition loop

(2010) D. J. Young et al.   RNA

Three distinct peptides from the N domain of translation termination factor eRF1 surround stop codon in the ribosome

(2010) K. N. Bulygin et al.   RNA

Structural insights into eRF3 and stop codon recognition by eRF1

(2009) Z. Cheng et al.   GENES & DEVELOPMENT

Molecular dissection of translation termination mechanism identifies two new critical regions in eRF1

(2009) Isabelle Hatin et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

BLogo: a tool for visualization of bias in biological sequences

(2008) Wencheng Li et al.   BIOINFORMATICS

The mRNA Export Factor Gle1 and Inositol Hexakisphosphate Regulate Distinct Stages of Translation

(2008) Timothy A. Bolger et al.   CELL

Distinct eRF3 Requirements Suggest Alternate eRF1 Conformations Mediate Peptide Release during Eukaryotic Translation Termination

(2008) Hua Fan-Minogue et al.   MOLECULAR CELL

Transterm: a database to aid the analysis of regulatory sequences in mRNAs

(2008) G. H. Jacobs et al.   NUCLEIC ACIDS RESEARCH