i-Clamp phenoxazine for the fine tuning of DNA i-motif stability

The structural diversity of C-rich DNA aggregates: unusual self-assembly of beetle-like nanostructures

(2018) A. D. Protopopova et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Prevalent Sequences in the Human Genome Can Form Mini i-Motif Structures at Physiological pH

(2017) Bartomeu Mir et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

4n–1 Is a “Sweet Spot” in DNA i-Motif Folding of 2′-Deoxycytidine Homopolymers

(2017) Aaron M. Fleming et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Antagonistic Enzymes in a Biocatalytic pH Feedback System Program Autonomous DNA Hydrogel Life Cycles

(2017) Laura Heinen et al.   NANO LETTERS

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential

(2017) Robert Hänsel-Hertsch et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Identification of multiple genomic DNA sequences which form i-motif structures at neutral pH

(2017) Elisé P. Wright et al.   NUCLEIC ACIDS RESEARCH

Programmable i-motif DNA folding topology for a pH-switched reversible molecular sensing device

(2017) Lili Shi et al.   NUCLEIC ACIDS RESEARCH

Improved i-motif thermal stability by insertion of anthraquinone monomers

(2017) Alaa S. Gouda et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Topological impact of noncanonical DNA structures on Klenow fragment of DNA polymerase

(2017) Shuntaro Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nucleic Acidi-Motif Structures in Analytical Chemistry

(2016) Joan Josep Alba et al.   CRITICAL REVIEWS IN ANALYTICAL CHEMISTRY

Embracing proteins: structural themes in aptamer–protein complexes

(2016) Amy D Gelinas et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Thermal Stability of Modified i-Motif Oligonucleotides with Naphthalimide Intercalating Nucleic Acids

(2016) Ahmed Ali El-Sayed et al.   HELVETICA CHIMICA ACTA

G4 Aptamers: Trends in Structural Design

(2016) Anna Varizhuk et al.   MINI-REVIEWS IN MEDICINAL CHEMISTRY

Assembly of supramolecular DNA complexes containing both G-quadruplexes and i-motifs by enhancing the G-repeat-bearing capacity of i-motifs

(2016) Yanwei Cao et al.   NUCLEIC ACIDS RESEARCH

Stabilization of i-motif structures by 2′-β-fluorination of DNA

(2016) Hala Abou Assi et al.   NUCLEIC ACIDS RESEARCH

Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences

(2016) Albino Bacolla et al.   NUCLEIC ACIDS RESEARCH

Refinement of the Sugar–Phosphate Backbone Torsion Beta for AMBER Force Fields Improves the Description of Z- and B-DNA

(2015) Marie Zgarbová et al.   Journal of Chemical Theory and Computation

Fluorescent Probe for Proton-Coupled DNA Folding Revealing Slow Exchange of i-Motif and Duplex Structures

(2015) Guillaume Mata et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Fluorescent Sensor for PH Monitoring Based on an i-Motif- – Switching Aptamer Containing a Tricyclic Cytosine Analogue (tC)

(2015) Patrycja Bielecka et al.   MOLECULES

Loop nucleotides impact the stability of intrastrand i-motif structures at neutral pH

(2015) Taiga Fujii et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Pyrene functionalized molecular beacon with pH-sensitive i-motif in a loop

(2015) Anna Dembska et al.   SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY

A Universal Base in a Specific Role: Tuning up a Thrombin Aptamer with 5-Nitroindole

(2015) Vladimir B. Tsvetkov et al.   Scientific Reports

i-Motif DNA: Structure, stability and targeting with ligands

(2014) Henry A. Day et al.   BIOORGANIC & MEDICINAL CHEMISTRY

Folding and Hydrodynamics of a DNA i-Motif from the c-MYC Promoter Determined by Fluorescent Cytidine Analogs

(2014) Samantha M. Reilly et al.   BIOPHYSICAL JOURNAL

The Dynamic Character of the BCL2 Promoter i-Motif Provides a Mechanism for Modulation of Gene Expression by Compounds That Bind Selectively to the Alternative DNA Hairpin Structure

(2014) Samantha Kendrick et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Transcriptional Complex Between the BCL2 i-Motif and hnRNP LL Is a Molecular Switch for Control of Gene Expression That Can Be Modulated by Small Molecules

(2014) Hyun-Jin Kang et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Comparison of the ‘Chemical’ and ‘Structural’ Approaches to the Optimization of the Thrombin-Binding Aptamer

(2014) Olga Tatarinova et al.   PLoS One

Fundamental aspects of the nucleic acid i-motif structures

(2014) S. Benabou et al.   RSC Advances

Unlocked Nucleic Acids with a Pyrene-Modified Uracil: Synthesis, Hybridization Studies, Fluorescent Properties and i-Motif Stability

(2013) Pavla Perlíková et al.   CHEMBIOCHEM

Toward Improved Description of DNA Backbone: Revisiting Epsilon and Zeta Torsion Force Field Parameters

(2013) Marie Zgarbová et al.   Journal of Chemical Theory and Computation

When secondary comes first – The importance of non-canonical DNA structures

(2012) Natalie Saini et al.   BIOCHIMIE

Reference Simulations of Noncanonical Nucleic Acids with Different χ Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNA

(2012) Miroslav Krepl et al.   Journal of Chemical Theory and Computation

Study of pH-Induced Folding and Unfolding Kinetics of the DNA i-Motif by Stopped-Flow Circular Dichroism

(2012) Chun Chen et al.   LANGMUIR

Studying the Influence of the Pyrene Intercalator TINA on the Stability of DNA i-Motifs

(2012) Ahmed A. El-Sayed et al.   NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS

Time-Resolved NMR Spectroscopic Studies of DNA i-Motif Folding Reveal Kinetic Partitioning

(2011) Anna Lena Lieblein et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Synthesis of β-Pyrrolic-Modified Porphyrins and Their Incorporation into DNA

(2011) Adam W. I. Stephenson et al.   CHEMISTRY-A EUROPEAN JOURNAL

Modulation of i-motif thermodynamic stability by the introduction of UNA (unlocked nucleic acid) monomers

(2010) Anna Pasternak et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Tunable c-MYC LNA i-motif

(2009) Niti Kumar et al.   CHEMICAL COMMUNICATIONS

Probe for i-motif structure and G-rich strands using end-stacking ability

(2009) Il Joon Lee et al.   CHEMICAL COMMUNICATIONS

A DNA nanomachine that maps spatial and temporal pH changes inside living cells

(2009) Souvik Modi et al.   Nature Nanotechnology

The effect of 2′-fluorine substitutions on DNA i-motif conformation and stability

(2008) Clare P. Fenna et al.   CHEMICAL COMMUNICATIONS