Native soils with their microbiotas elicit a state of alert in tomato plants

Root microbiota drive direct integration of phosphate stress and immunity

(2017) Gabriel Castrillo et al.   NATURE

Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

(2016) Slavica Matić et al.   BMC GENOMICS

Influence of plant genotype on the cultivable fungi associated to tomato rhizosphere and roots in different soils

(2016) Anna Poli et al.   Fungal Biology

The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health

(2016) Christine Vogel et al.   NEW PHYTOLOGIST

Pampered inside, pestered outside? Differences and similarities between plants growing in controlled conditions and in the field

(2016) Hendrik Poorter et al.   NEW PHYTOLOGIST

Arbuscular mycorrhizal symbiosis stimulates key genes of the phenylpropanoid biosynthesis and stilbenoid production in grapevine leaves in response to downy mildew and grey mould infection

(2016) Sébastien Bruisson et al.   PHYTOCHEMISTRY

Gr and hp-1 tomato mutants unveil unprecedented interactions between arbuscular mycorrhizal symbiosis and fruit ripening

(2016) Matteo Chialva et al.   PLANTA

Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome

(2016) Bram Beckers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Root nodule symbiosis inLotus japonicusdrives the establishment of distinctive rhizosphere, root, and nodule bacterial communities

(2016) Rafal Zgadzaj et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil immune responses

(2016) J. M. Raaijmakers et al.   SCIENCE

Manipulating the Microbiota

(2016) Caroline Ash et al.   SCIENCE

Influence of rootstock on vegetative growth, fruit yield and quality in ‘Cuore di Bue’, an heirloom tomato

(2016) F. Di Gioia et al.   JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY

GOplot: an R package for visually combining expression data with functional analysis: Fig. 1.

(2015) Wencke Walter et al.   BIOINFORMATICS

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Transcription factorStWRKY1regulates phenylpropanoid metabolites conferring late blight resistance in potato

(2015) Kalenahalli N. Yogendra et al.   JOURNAL OF EXPERIMENTAL BOTANY

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences

(2015) M. Jeanbille et al.   MICROBIAL ECOLOGY

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Phytohormones as integrators of environmental signals in the regulation of mycorrhizal symbioses

(2015) María J. Pozo et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

Metabolic transition in mycorrhizal tomato roots

(2015) Javier Rivero et al.   Frontiers in Microbiology

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

From root to fruit: RNA-Seq analysis shows that arbuscular mycorrhizal symbiosis may affect tomato fruit metabolism

(2014) Inès Zouari et al.   BMC GENOMICS

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

The Acetyl Bromide Method Is Faster, Simpler and Presents Best Recovery of Lignin in Different Herbaceous Tissues than Klason and Thioglycolic Acid Methods

(2014) Flavia Carolina Moreira-Vilar et al.   PLoS One

Genome-wide association study of Arabidopsis thaliana leaf microbial community

(2014) Matthew W. Horton et al.   Nature Communications

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Dual Regulation of Gene Expression Mediated by Extended MAPK Activation and Salicylic Acid Contributes to Robust Innate Immunity in Arabidopsis thaliana

(2013) Kenichi Tsuda et al.   PLoS Genetics

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits

(2011) Jennifer A. Lau et al.   NEW PHYTOLOGIST

Of PAMPs and Effectors: The Blurred PTI-ETI Dichotomy

(2011) Bart P.H.J. Thomma et al.   PLANT CELL

Root Growth Inhibition and Lignification Induced by Salt Stress in Soybean

(2010) G. Y. S. Neves et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

The origin and evolution of lignin biosynthesis

(2010) Jing-Ke Weng et al.   NEW PHYTOLOGIST

Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors

(2010) Y. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus

(2009) Mike Guether et al.   NEW PHYTOLOGIST

Class III peroxidases in plant defence reactions

(2008) L. Almagro et al.   JOURNAL OF EXPERIMENTAL BOTANY