Disparities in second-generation DNA metabarcoding results exposed with accessible and repeatable workflows

Comparing morphological and molecular diet analyses and fecal DNA sampling protocols for a terrestrial carnivore

(2017) Elyce N. Gosselin et al.   WILDLIFE SOCIETY BULLETIN

Female dietary bias towards large migratory moths in the European free-tailed bat (Tadarida teniotis)

(2016) Vanessa A. Mata et al.   Biology Letters

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

(2016) Melanie Schirmer et al.   BMC BIOINFORMATICS

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

(2016) Rosalinda D’Amore et al.   BMC GENOMICS

The effects of parameter choice on defining molecular operational taxonomic units and resulting ecological analyses of metabarcoding data

(2016) Elizabeth L. Clare et al.   GENOME

What you need is what you eat? Prey selection by the bat Myotis daubentonii

(2016) Eero J. Vesterinen et al.   MOLECULAR ECOLOGY

How to limit false positives in environmental DNA and metabarcoding?

(2016) Gentile Francesco Ficetola et al.   Molecular Ecology Resources

Counting animal species with DNA barcodes: Canadian insects

(2016) Paul D. N. Hebert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Tools and techniques for computational reproducibility

(2016) Stephen R. Piccolo et al.   GigaScience

The Peer Reviewers' Openness Initiative: incentivizing open research practices through peer review

(2016) Richard D. Morey et al.   Royal Society Open Science

Trophic requirements beyond foraging habitats: The importance of prey source habitats in bat conservation

(2015) Aitor Arrizabalaga-Escudero et al.   BIOLOGICAL CONSERVATION

DNA metabarcoding of insects and allies: an evaluation of primers and pipelines

(2015) G.-J. Brandon-Mong et al.   BULLETIN OF ENTOMOLOGICAL RESEARCH

Crop pests eaten by bats in organic pecan orchards

(2015) Veronica A. Brown et al.   CROP PROTECTION

Dietary overlap and seasonality in three species of mormoopid bats from a tropical dry forest

(2015) Valeria B. Salinas-Ramos et al.   MOLECULAR ECOLOGY

Tag jumps illuminated - reducing sequence-to-sample misidentifications in metabarcoding studies

(2015) Ida Baerholm Schnell et al.   Molecular Ecology Resources

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

(2015) Melanie Schirmer et al.   NUCLEIC ACIDS RESEARCH

Importance of multi-dimensional analyses of resource partitioning in highly mobile species assemblages

(2015) Anna Roswag et al.   POPULATION ECOLOGY

Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling

(2014) Stephen J. Salipante et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular detection of trophic interactions: emerging trends, distinct advantages, significant considerations and conservation applications

(2014) Elizabeth L. Clare   Evolutionary Applications

Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter

(2014) Paul R Hope et al.   Frontiers in Zoology

Species-level analysis of diets of two mormoopid bats from Puerto Rico

(2014) Ashley K. Rolfe et al.   JOURNAL OF MAMMALOGY

Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias

(2014) Laurence J. Clarke et al.   Molecular Ecology Resources

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

Swarm: robust and fast clustering method for amplicon-based studies

(2014) Frédéric Mahé et al.   PeerJ

Analysis of DNA from Feces to Identify Prey of Big Brown Bats (Eptesicus fuscus) Caught in Apple Orchards

(2013) Brenna L. Long et al.   AMERICAN MIDLAND NATURALIST

Who's for dinner? High-throughput sequencing reveals bat dietary differentiation in a biodiversity hotspot where prey taxonomy is largely undescribed

(2013) Joanna M. Burgar et al.   MOLECULAR ECOLOGY

An integrative approach to detect subtle trophic niche differentiation in the sympatric trawling bat speciesMyotis dasycnemeandMyotis daubentonii

(2013) F. Krüger et al.   MOLECULAR ECOLOGY

Resource partitioning by insectivorous bats in Jamaica

(2013) Matthew A. Emrich et al.   MOLECULAR ECOLOGY

An inordinate fondness for beetles? Variation in seasonal dietary preferences of night-roosting big brown bats (Eptesicus fuscus)

(2013) Elizabeth L. Clare et al.   MOLECULAR ECOLOGY

The diet ofMyotis lucifugusacross Canada: assessing foraging quality and diet variability

(2013) Elizabeth L. Clare et al.   MOLECULAR ECOLOGY

DNA metabarcoding multiplexing and validation of data accuracy for diet assessment: application to omnivorous diet

(2013) M. De Barba et al.   Molecular Ecology Resources

Next Generation Sequencing of Fecal DNA Reveals the Dietary Diversity of the Widespread Insectivorous Predator Daubenton’s Bat (Myotis daubentonii) in Southwestern Finland

(2013) Eero J. Vesterinen et al.   PLoS One

Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data

(2013) Lauren M. Bragg et al.   PLoS Computational Biology

Identification of prey ofMyotis septentrionalisusing DNA-based techniques

(2012) Luke E. Dodd et al.   JOURNAL OF MAMMALOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Performance comparison of benchtop high-throughput sequencing platforms

(2012) Nicholas J Loman et al.   NATURE BIOTECHNOLOGY

From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments

(2011) John A. Darling et al.   ENVIRONMENTAL RESEARCH

Guidelines of the American Society of Mammalogists for the use of wild mammals in research

(2011) Robert S. Sikes et al.   JOURNAL OF MAMMALOGY

Who is eating what: diet assessment using next generation sequencing

(2011) FRANCOIS POMPANON et al.   MOLECULAR ECOLOGY

BOLD’s role in barcode data management and analysis: a response

(2011) S. RATNASINGHAM et al.   Molecular Ecology Resources

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Molecular Diet Analysis of Two African Free-Tailed Bats (Molossidae) Using High Throughput Sequencing

(2011) Kristine Bohmann et al.   PLoS One

Challenges and Opportunities of Open Data in Ecology

(2011) O. J. Reichman et al.   SCIENCE

High-throughput sequencing offers insight into mechanisms of resource partitioning in cryptic bat species

(2011) Orly Razgour et al.   Ecology and Evolution

Taxon-specific PCR for DNA barcoding arthropod prey in bat faeces

(2010) MATT R. K. ZEALE et al.   Molecular Ecology Resources

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Prey Consumed by Eight Species of Insectivorous Bats from Southern Illinois

(2009) George A. Feldhamer et al.   AMERICAN MIDLAND NATURALIST

Conservation in the dark? The information used to support management decisions

(2009) Carly N Cook et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Species on the menu of a generalist predator, the eastern red bat (Lasiurus borealis): using a molecular approach to detect arthropod prey

(2009) ELIZABETH L. CLARE et al.   MOLECULAR ECOLOGY

Revolution in food web analysis and trophic ecology: diet analysis by DNA and stable isotope analysis

(2009) L. CARREON-MARTINEZ et al.   MOLECULAR ECOLOGY

The effectiveness of katydid (Neoconocephalus ensiger) song cessation as antipredator defence against the gleaning bat Myotis septentrionalis

(2008) Hannah M. ter Hofstede et al.   BEHAVIORAL ECOLOGY AND SOCIOBIOLOGY

DNA barcoding for ecologists

(2008) Alice Valentini et al.   TRENDS IN ECOLOGY & EVOLUTION