Chromosomal inversions promote genomic islands of concerted evolution of Hsp70 genes in the Drosophila subobscura species subgroup

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Evolution caused by extreme events

(2017) Peter R. Grant et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The evolution of heat shock genes and expression patterns of heat shock proteins in the species from temperature contrasting habitats

(2017) D. G. Garbuz et al.   RUSSIAN JOURNAL OF GENETICS

Genomic Evidence for Adaptive Inversion Clines inDrosophila melanogaster

(2016) Martin Kapun et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene conversion and linkage: effects on genome evolution and speciation

(2016) Katharine L. Korunes et al.   MOLECULAR ECOLOGY

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis

(2016) Jana Trifinopoulos et al.   NUCLEIC ACIDS RESEARCH

Codon bias and gene ontology in holometabolous and hemimetabolous insects

(2015) David B. Carlini et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

(2015) Itamar Sela et al.   NUCLEIC ACIDS RESEARCH

Genome-wide evolutionary response to a heat wave in Drosophila

(2013) F. Rodriguez-Trelles et al.   Biology Letters

Inducing extra copies of the Hsp70 gene in Drosophila melanogaster increases energetic demand

(2013) Luke A Hoekstra et al.   BMC EVOLUTIONARY BIOLOGY

INTROGRESSION IN THEDROSOPHILA SUBOBSCURA-D. MADEIRENSISSISTER SPECIES: EVIDENCE OF GENE FLOW IN NUCLEAR GENES DESPITE MITOCHONDRIAL DIFFERENTIATION

(2013) Danielle K. Herrig et al.   EVOLUTION

Gene flow and gene flux shape evolutionary patterns of variation in Drosophila subobscura

(2013) C Pegueroles et al.   HEREDITY

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multilocus analysis of nucleotide variation in Drosophila madeirensis, an endemic species of the Laurisilva forest in Madeira

(2012) M. KHADEM et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Hsp70 protein levels and thermotolerance in Drosophila subobscura: a reassessment of the thermal co-adaptation hypothesis

(2012) G. CALABRIA et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

An Improved Implementation of Effective Number of Codons (Nc)

(2012) X. Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

“Patchy-Tachy” Leads to False Positives for Recombination

(2011) Stephanie Sun et al.   MOLECULAR BIOLOGY AND EVOLUTION

Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes

(2011) Maria Anisimova et al.   SYSTEMATIC BIOLOGY

Neutral and Non-Neutral Evolution of Duplicated Genes with Gene Conversion

(2011) Jeffrey Fawcett et al.   Genes

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

(2010) W. Delport et al.   BIOINFORMATICS

DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites

(2010) Wenjie Deng et al.   BIOTECHNIQUES

Climate change and chromosomal inversions in Drosophila subobscura

(2010) EL Rezende et al.   CLIMATE RESEARCH

Nonallelic Gene Conversion in the Genus Drosophila

(2010) C. Casola et al.   GENETICS

Molecular population genetics of the OBP83 genomic region in Drosophila subobscura and D. guanche: contrasting the effects of natural selection and gene arrangement expansion in the patterns of nucleotide variation

(2010) A Sánchez-Gracia et al.   HEREDITY

A reconstruction of Palaeo-Macaronesia, with particular reference to the long-term biogeography of the Atlantic island laurel forests

(2010) José María Fernández-Palacios et al.   JOURNAL OF BIOGEOGRAPHY

Chromosomal Inversions, Natural Selection and Adaptation in the Malaria Vector Anopheles funestus

(2010) D. Ayala et al.   MOLECULAR BIOLOGY AND EVOLUTION

GUIDANCE: a web server for assessing alignment confidence scores

(2010) O. Penn et al.   NUCLEIC ACIDS RESEARCH

Phylogeny Disambiguates the Evolution of Heat-Shock cis-Regulatory Elements in Drosophila

(2010) Sibo Tian et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

How and Why Chromosome Inversions Evolve

(2010) Mark Kirkpatrick   PLOS BIOLOGY

CLINAL PATTERNS OF CHROMOSOMAL INVERSION POLYMORPHISMS INDROSOPHILA SUBOBSCURAARE PARTLY ASSOCIATED WITH THERMAL PREFERENCES AND HEAT STRESS RESISTANCE

(2009) Carla Rego et al.   EVOLUTION

Measuring evolutionary responses to global warming: cautionary lessons fromDrosophila

(2009) FRANCISCO RODRÍGUEZ-TRELLES et al.   Insect Conservation and Diversity

Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?

(2008) Ary A. Hoffmann et al.   Annual Review of Ecology Evolution and Systematics

Rapid, Transcription-Independent Loss of Nucleosomes over a Large Chromatin Domain at Hsp70 Loci

(2008) Steven J. Petesch et al.   CELL

The long-term ecology of the lost forests of La Laguna, Tenerife (Canary Islands)

(2008) Lea de Nascimento et al.   JOURNAL OF BIOGEOGRAPHY

Duplication and Gene Conversion in the Drosophila melanogaster Genome

(2008) Naoki Osada et al.   PLoS Genetics