Alternative splicing associated with phenotypic plasticity in the bumble bee Bombus terrestris

Inferring regulatory change from gene expression: the confounding effects of tissue scaling

(2016) Stephen H. Montgomery et al.   MOLECULAR ECOLOGY

DNA Methylation in Social Insects: How Epigenetics Can Control Behavior and Longevity

(2015) Hua Yan et al.   Annual Review of Entomology

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

(2015) Delasa Aghamirzaie et al.   BMC GENOMICS

Transcriptional regulation of insect steroid hormone biosynthesis and its role in controlling timing of molting and metamorphosis

(2015) Yuko S. Niwa et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Alternative Splice in Alternative Lice

(2015) Jaime M. Tovar-Corona et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reproductive workers show queenlike gene expression in an intermediately eusocial insect, the buff-tailed bumble beeBombus terrestris

(2015) Mark C. Harrison et al.   MOLECULAR ECOLOGY

Molecular tools and bumble bees: revealing hidden details of ecology and evolution in a model system

(2015) S. Hollis Woodard et al.   MOLECULAR ECOLOGY

The genomes of two key bumblebee species with primitive eusocial organization

(2015) Ben M Sadd et al.   GENOME BIOLOGY

Bombyx E75 isoforms display stage- and tissue-specific responses to 20-hydroxyecdysone

(2015) Kang Li et al.   Scientific Reports

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Empirical fitness landscapes and the predictability of evolution

(2014) J. Arjan G.M. de Visser et al.   NATURE REVIEWS GENETICS

rMATS: Robust and flexible detection of differential alternative splicing from replicate RNA-Seq data

(2014) Shihao Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methylation and worker reproduction in the bumble-bee (Bombus terrestris)

(2014) H. E. Amarasinghe et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Molecular traces of alternative social organization in a termite genome

(2014) Nicolas Terrapon et al.   Nature Communications

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality

(2013) D. F. Simola et al.   GENOME RESEARCH

RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee

(2013) H. Li-Byarlay et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide and Caste-Specific DNA Methylomes of the Ants Camponotus floridanus and Harpegnathos saltator

(2012) Roberto Bonasio et al.   CURRENT BIOLOGY

Shifting behaviour: epigenetic reprogramming in eusocial insects

(2012) Solenn Patalano et al.   CURRENT OPINION IN CELL BIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees

(2012) S. Foret et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Statistical inferences for isoform expression in RNA-Seq

(2009) Hui Jiang et al.   BIOINFORMATICS

Identifiability of isoform deconvolution from junction arrays and RNA-Seq

(2009) David Hiller et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH