The Impact of Anthropogenic Disturbance on Bacterioplankton Communities During the Construction of Donghu Tunnel (Wuhan, China)

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China)

(2017) Qingyun Yan et al.   MOLECULAR ECOLOGY

Marine Bacterioplankton Seasonal Succession Dynamics

(2017) Carina Bunse et al.   TRENDS IN MICROBIOLOGY

Environmental filtering decreases with fish development for the assembly of gut microbiota

(2016) Qingyun Yan et al.   ENVIRONMENTAL MICROBIOLOGY

Enhancement of sediment phosphorus release during a tunnel construction across an urban lake (Lake Donghu, China)

(2016) Siyang Wang et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

pH Influences the Importance of Niche-Related and Neutral Processes in Lacustrine Bacterioplankton Assembly

(2015) Lijuan Ren et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis

(2015) Liyou Wu et al.   BMC MICROBIOLOGY

Combined effects of zooplankton grazing and dispersal on the diversity and assembly mechanisms of bacterial metacommunities

(2015) Mercè Berga et al.   ENVIRONMENTAL MICROBIOLOGY

Environmental rather than spatial factors structure bacterioplankton communities in shallow lakes along a > 6000 km latitudinal gradient in South America

(2015) Caroline Souffreau et al.   ENVIRONMENTAL MICROBIOLOGY

Marine microbial community dynamics and their ecological interpretation

(2015) Jed A. Fuhrman et al.   NATURE REVIEWS MICROBIOLOGY

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Impacts of the Three Gorges Dam on microbial structure and potential function

(2015) Qingyun Yan et al.   Scientific Reports

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

(2014) Jacob A Cram et al.   ISME Journal

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From ecosystems to ecosystem services: Stream restoration as ecological engineering

(2013) Margaret A. Palmer et al.   ECOLOGICAL ENGINEERING

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Biogeography of bacterial communities exposed to progressive long-term environmental change

(2012) Ramiro Logares et al.   ISME Journal

A decade of seasonal dynamics and co-occurrences within freshwater bacterioplankton communities from eutrophic Lake Mendota, WI, USA

(2012) Emily L Kara et al.   ISME Journal

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Bottom-Up versus Top-Down Control of Hypo- and Epilimnion Free-Living Bacterial Community Structures in Two Neighboring Freshwater Lakes

(2011) Lyria Berdjeb et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Resistance, resilience and recovery: aquatic bacterial dynamics after water column disturbance

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

(2011) Caroline S Fortunato et al.   ISME Journal

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phytoplankton variation and its relationship with the environment in Xiangxi Bay in spring after damming of the Three-Gorges, China

(2010) Guangjie Zhou et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spatiotemporal heterogeneity of plankton communities in Lake Donghu, China, as revealed by PCR–denaturing gradient gel electrophoresis and its relation to biotic and abiotic factors

(2008) Yuhe Yu et al.   FEMS MICROBIOLOGY ECOLOGY

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA