Interferon-stimulated genes: new platforms and computational approaches

The impact of interferon-regulatory factors to macrophage differentiation and polarization into M1 and M2

(2018) Dimitry A. Chistiakov et al.   IMMUNOBIOLOGY

Massive mining of publicly available RNA-seq data from human and mouse

(2018) Alexander Lachmann et al.   Nature Communications

Single-cell analysis of early antiviral gene expression reveals a determinant of stochastic IFNB1 expression

(2017) Sultan Doğanay et al.   Integrative Biology

Microarray and bioinformatics analyses of gene expression profiles in BALB/c murine macrophage polarization

(2017) Li Jiang et al.   Molecular Medicine Reports

Evaluation of the innate immune responses to influenza and live-attenuated influenza vaccine infection in primary differentiated human nasal epithelial cells

(2017) Adriana Forero et al.   VACCINE

A small-molecule IRF3 agonist functions as an influenza vaccine adjuvant by modulating the antiviral immune response

(2017) Peter Probst et al.   VACCINE

Fundamental properties of the mammalian innate immune system revealed by multispecies comparison of type I interferon responses

(2017) Andrew E. Shaw et al.   PLOS BIOLOGY

Pathway Enrichment Analysis with Networks

(2017) Lu Liu et al.   Genes

Type I and III Interferon in the Gut: Tight Balance between Host Protection and Immunopathology

(2017) Johanna Pott et al.   Frontiers in Immunology

Interferon Lambda Genetics and Biology in Regulation of Viral Control

(2017) Emily A. Hemann et al.   Frontiers in Immunology

Interferon-alpha treatment rapidly clears Hepatitis E virus infection in humanized mice

(2017) Martijn D. B. van de Garde et al.   Scientific Reports

Parsing the Interferon Transcriptional Network and Its Disease Associations

(2016) Sara Mostafavi et al.   CELL

Type I interferon–mediated monogenic autoinflammation: The type I interferonopathies, a conceptual overview

(2016) Mathieu P. Rodero et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Cell-Cell Sensing of Viral Infection by Plasmacytoid Dendritic Cells

(2016) Brian Webster et al.   JOURNAL OF VIROLOGY

Interferon α or β: which is the culprit in autoimmune disease?

(2016) Mary K. Crow   Nature Reviews Rheumatology

NF-κB and IRF pathways: cross-regulation on target genes promoter level

(2015) Marta Iwanaszko et al.   BMC GENOMICS

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

(2015) Fabian Grubert et al.   CELL

SnapShot: Interferon Signaling

(2015) Kwan T. Chow et al.   CELL

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

(2015) Sebastian M. Waszak et al.   CELL

Next-Generation Sequencing Reveals a Controlled Immune Response to Zaire Ebola Virus Challenge in Cynomolgus Macaques Immunized with Vesicular Stomatitis Virus Expressing Zaire Ebola Virus Glycoprotein (VSVΔG/EBOVgp)

(2015) Fredrik Barrenas et al.   Clinical and Vaccine Immunology

Integrated Transcriptomics Establish Macrophage Polarization Signatures and have Potential Applications for Clinical Health and Disease

(2015) Matheus Becker et al.   Scientific Reports

Interferon-Stimulated Genes: A Complex Web of Host Defenses

(2014) William M. Schneider et al.   Annual Review of Immunology

Dynamic Cross Talk Model of the Epithelial Innate Immune Response to Double-Stranded RNA Stimulation: Coordinated Dynamics Emerging from Cell-Level Noise

(2014) Roberto Bertolusso et al.   PLoS One

Higher Expression of Several Interferon-Stimulated Genes in HIV-1-Infected Females After Adjusting for the Level of Viral Replication

(2013) J. Judy Chang et al.   JOURNAL OF INFECTIOUS DISEASES

Pan-viral specificity of IFN-induced genes reveals new roles for cGAS in innate immunity

(2013) John W. Schoggins et al.   NATURE

The JAK-STAT Pathway at Twenty

(2012) George R. Stark et al.   IMMUNITY

CD40 Stimulates a "Feed-Forward" NF- B-Driven Molecular Pathway That Regulates IFN-  Expression in Carcinoma Cells

(2012) A. Moschonas et al.   JOURNAL OF IMMUNOLOGY

Gene set enrichment analysis: performance evaluation and usage guidelines

(2011) J.-H. Hung et al.   BRIEFINGS IN BIOINFORMATICS

Systems Biology of Interferon Responses

(2011) Paul Hertzog et al.   JOURNAL OF INTERFERON AND CYTOKINE RESEARCH

A diverse range of gene products are effectors of the type I interferon antiviral response

(2011) John W. Schoggins et al.   NATURE

Joint Genetic Analysis of Gene Expression Data with Inferred Cellular Phenotypes

(2011) Leopold Parts et al.   PLoS Genetics

Peroxisomes Are Signaling Platforms for Antiviral Innate Immunity

(2010) Evelyn Dixit et al.   CELL

Transcriptome genetics using second generation sequencing in a Caucasian population

(2010) Stephen B. Montgomery et al.   NATURE

Understanding mechanisms underlying human gene expression variation with RNA sequencing

(2010) Joseph K. Pickrell et al.   NATURE

A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies

(2010) Oliver Stegle et al.   PLoS Computational Biology

Abundant Quantitative Trait Loci Exist for DNA Methylation and Gene Expression in Human Brain

(2010) J. Raphael Gibbs et al.   PLoS Genetics

Accurate Discovery of Expression Quantitative Trait Loci Under Confounding From Spurious and Genuine Regulatory Hotspots

(2008) H. M. Kang et al.   GENETICS

Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans

(2008) Troy D Querec et al.   NATURE IMMUNOLOGY

INTERFEROME: the database of interferon regulated genes

(2008) Shamith A. Samarajiwa et al.   NUCLEIC ACIDS RESEARCH