Article
Biochemistry & Molecular Biology
Guanshi Zhang, Dawid Tobolski, Grzegorz Zwierzchowski, Rupasri Mandal, David S. Wishart, Burim N. Ametaj
Summary: This study identified various metabolic alterations in dairy cows prior to the occurrence of retained placenta, providing potential predictive biomarkers for the disease. Several metabolites were found to be significantly altered during different time periods, indicating their potential role in predicting the risk of retained placenta in dairy cows.
Article
Microbiology
Abdulmumini B. Amin, Lei Zhang, JiYou Zhang, Shengyong Mao
Summary: This study investigates the metabolic mechanism underlying the difference in milk yield of Holstein cows. The findings reveal differences in microbiota and metabolites between high milk yield and low milk yield groups. The study suggests that upregulated dopamine levels in the rumen fluid and milk may contribute to reduced milk yield, while upregulated citrulline and N-acetylornithine potentially enhance energy metabolism and gluconeogenesis, leading to high milk yield.
FRONTIERS IN MICROBIOLOGY
(2022)
Article
Veterinary Sciences
Luisa Magrin, Giulio Cozzi, Isabella Lora, Paola Prevedello, Flaviana Gottardo
Summary: Claw disorders are a significant health problem in dairy herds, with potential impacts on cow behavior and milk production. This study found that cows affected by claw disorders showed decreased activity, lower milk yield, and a decreasing trend in rumination time. These patterns could be used to develop algorithms for early lameness detection.
FRONTIERS IN VETERINARY SCIENCE
(2022)
Article
Agriculture, Dairy & Animal Science
Jang-Hoon Jo, Jalil Ghassemi Nejad, Dong-Qiao Peng, Hye-Ran Kim, Sang-Ho Kim, Hong-Gu Lee
Summary: This study aimed to characterize the impact of short-term heat stress on early lactating Holstein dairy cows. The results showed that cows under high temperature and high humidity conditions experienced decreased feed intake, altered physiological parameters, changes in blood metabolites, and reduced milk yield and composition.
Article
Agriculture, Dairy & Animal Science
R. Schmitt, L. Pieper, S. Borchardt, J. M. Swinkels, C. -c. Gelfert, R. Staufenbiel
Summary: This study assessed the effects of a single transdermal administration of flunixin meglumine (FM) in early postpartum Holstein Friesian dairy cows on milk yield, culling risk, and reproductive performance. The study found that FM treatment reduced systemic inflammation, leading to higher milk yield, reduced culling risk, and improved reproductive performance in the subsequent lactation.
JOURNAL OF DAIRY SCIENCE
(2023)
Article
Agriculture, Dairy & Animal Science
M. U. Akhtar, Hifzulrahman, M. Saadullah, T. N. Pasha, M. Abdullah, M. Ahmed, R. M. Shahbakht, M. N. Haque
Summary: The study indicates that prepartum controlled intake of a high protein diet can increase milk yield and lactation performance of dairy cows.
JOURNAL OF DAIRY SCIENCE
(2021)
Article
Agriculture, Dairy & Animal Science
A. B. P. Fontoura, J. E. Rico, A. N. Davis, W. A. Myers, B. N. Tate, R. Gervais, J. W. McFadden
Summary: The study evaluated the effects of dietary deoiled soy lecithin supplementation on milk production, plasma and milk fatty acid content, and apparent fatty acid digestibility in lactating dairy cows. The results showed that lecithin supplementation had an impact on dry matter intake, milk fat composition, and fatty acid profile, but did not significantly affect milk yield.
JOURNAL OF DAIRY SCIENCE
(2021)
Article
Veterinary Sciences
Zuo Wang, Yuannian Yu, Weijun Shen, Zhiliang Tan, Shaoxun Tang, Hui Yao, Jianhua He, Fachun Wan
Summary: This study revealed the metabolic responses of dairy cows to the replacement of soybean meal with fermented soybean meal. The results showed that the replacement could enhance nitrogen utilization and possibly influence the inflammatory reactions and antioxidative functions of dairy cattle. Differential metabolites and relevant pathways were identified, which could serve as biomarkers for the alterations in protein feed and nitrogen utilization efficiency of dairy cows.
FRONTIERS IN VETERINARY SCIENCE
(2022)
Article
Biotechnology & Applied Microbiology
Yue Wang, Xuemei Nan, Yiguang Zhao, Linshu Jiang, Hui Wang, Fan Zhang, Dengke Hua, Jun Liu, Junhu Yao, Liang Yang, Benhai Xiong
Summary: The intake of inulin can modulate the composition of milk microbiota and metabolites in dairy cows, which provides an alternative for the regulation and mitigation of subclinical mastitis.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2022)
Article
Agriculture, Dairy & Animal Science
W. Muizelaar, G. van Duinkerken, Z. Khan, J. Dijkstra
Summary: This study aimed to determine the effect of Chondrus crispus, Saccharina latissima, and Fucus serratus on lactational performance and enteric methane production in dairy cattle. The results showed that Saccharina latissima increased milk yield and lactose content, but did not affect methane emissions.
JOURNAL OF DAIRY SCIENCE
(2023)
Article
Agriculture, Multidisciplinary
Xiaona Liang, Enjie Diao, Shiquan Qian, Huwei Song, Xinran Xiang, Xiurong Gou, Xiumin Hu
Summary: This study analyzed the levels of amino acids (AAs) in cow milk (CM) and enzymatically treated CM, and investigated their antigenicity. The results showed that there were 50 AAs detected in the CM and FT groups, with 23 significantly different AAs. It was also found that the antigenicity of the FT group was significantly reduced.
JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE
(2023)
Article
Agriculture, Dairy & Animal Science
H. T. Holdorf, S. J. Kendall, K. E. Ruh, M. J. Caputo, G. J. Combs, S. J. Henisz, W. E. Brown, T. Bresolin, R. E. P. Ferreira, J. R. R. Dorea, H. M. White
Summary: Peripartum rumen-protected choline (RPC) supplementation benefits cow health and production, but the optimal dose is unknown. Increasing the dose of prepartum RPC supplementation may increase postpartum milk yield, but there is no additional benefit from increasing the prepartum dose of choline ion on milk production.
JOURNAL OF DAIRY SCIENCE
(2023)
Article
Agriculture, Dairy & Animal Science
Benedict Yanibada, Ulli Hohenester, Melanie Petera, Cecile Canlet, Stephanie Durand, Fabien Jourdan, Anne Ferlay, Diego P. Morgavi, Hamid Boudra
Summary: The study used a multiplatform metabolomics approach to investigate changes in milk metabolic profiles related to methanogenesis in dairy cows. Findings showed 38 discriminant metabolites affecting methane metabolism were identified, providing new insights on the potential role of milk metabolites as indicators of enteric methane modifications in dairy cows.
JOURNAL OF DAIRY SCIENCE
(2021)
Article
Agriculture, Dairy & Animal Science
Gan Li, Jian Chen, Dandan Peng, Xianhong Gu
Summary: Through transfer function modeling, a lag relationship between daily milk yield and heat stress indicators was identified, with daily milk yield responding to the maximum ambient temperature 1 day after the test day and lasting for 3 days. The strength of cross correlations between daily milk yield and maximum ambient temperature decreased gradually from 1 to 3 days, suggesting a declining lag response of daily milk yield. A transfer function model was established to track and predict the dynamic response of daily milk yield to maximum ambient temperature.
JOURNAL OF DAIRY SCIENCE
(2021)
Article
Agriculture, Dairy & Animal Science
S. J. Denholm, T. N. McNeilly, S. Bashir, M. C. Mitchell, E. Wall, A. A. Sneddon
Summary: This study investigated the potential negative consequences of selecting for favorable production-related traits on the nutrient levels in dairy cow milk, suggesting that breeding strategies focused on increasing milk production may lead to a decrease in beneficial nutrients for human consumption.
JOURNAL OF DAIRY SCIENCE
(2022)
Article
Microbiology
Ming-Yuan Xue, Jia-Jin Wu, Yun-Yi Xie, Sen-Lin Zhu, Yi-Fan Zhong, Jian-Xin Liu, Hui-Zeng Sun
Summary: In this study, the key microbial genomes and epithelial cell subtypes involved in fiber digestion, VFA absorption, and metabolism in the rumen of dairy cows were identified. The integration of these data provides a foundation for understanding the production process of dairy cows.
Article
Microbiology
Ming-Yuan Xue, Yun-Yi Xie, Yifan Zhong, Xiao-Jiao Ma, Hui-Zeng Sun, Jian-Xin Liu
Summary: This study used metagenomics, metatranscriptomics, and metabolomics to uncover ruminal microbial features associated with feed efficiency in dairy cows. The results showed that high-efficiency animals had more and stronger microbial interactions in the rumen, with Selenomonas and members of the Succinivibrionaceae family playing key roles in carbohydrate metabolism. Analysis of ruminal metabolites identified six carbohydrates-derived metabolites as potential markers to differentiate efficient and inefficient microbiomes.
Article
Agriculture, Dairy & Animal Science
Zihai Wei, Xiao Xie, Mingyuan Xue, Teresa G. Valencak, Jianxin Liu, Huizeng Sun
Summary: Crop by-products are important for sustainable development in the dairy industry, especially in areas with limited pasture. However, feeding crop by-products can lower milk production in dairy cows due to their poor nutrient quality. Further research is needed to understand the microbial mechanisms and effects on milk production.
Article
Microbiology
Long-Ping Li, Ke-Lan Peng, Ming-Yuan Xue, Sen-Lin Zhu, Jian-Xin Liu, Hui-Zeng Sun
Summary: Age has a significant impact on the rumen microbiota of dairy buffaloes, with differences in microbial composition and functions observed among different age groups. Bacteroidetes and Firmicutes are the dominant phyla, with Prevotella being the most abundant genus. The proportion of Bacteroides and Methanobrevibacter increases with age, while the abundance of Lactobacillus decreases. The functional analysis reveals differences in carbohydrate and protein metabolism among different age groups.
Article
Microbiology
Xin-Wei Zang, Hui-Zeng Sun, Ming-Yuan Xue, Zhe Zhang, Graham Plastow, Tianfu Yang, Le Luo Guan, Jian-Xin Liu
Summary: This study identified heritable and nonheritable bacterial taxa at species level in the rumen of dairy cows, and investigated their contributions to milk production traits. The results showed that heritable bacteria have a stronger contribution to milk traits compared to nonheritable bacteria. The findings suggest that improving milk production traits can be achieved through attention to host genetics and the interaction with the rumen microbiota.
Article
Biology
Jia-Jin Wu, Senlin Zhu, Yi-Fan Tang, Fengfei Gu, Jian-Xin Liu, Hui-Zeng Sun
Summary: This study provides insights into the cell composition of the rumen epithelium using single-cell transcriptomics, revealing different cell subtypes and immune cell distribution. Comparing newborn and adult cattle samples, differences in epithelial cells and the importance of Desulfovibrio and pyridoxal in the adult rumen were identified. These findings contribute to our understanding of rumen development and function and hold potential for precision improvement of rumen function and milk/meat production in cattle.
Article
Quantum Science & Technology
Xi He, Feiyu Du, Mingyuan Xue, Xiaogang Du, Tao Lei, A. K. Nandi
Summary: Transfer learning is a crucial subfield of machine learning that aims to accomplish a task in the target domain with the knowledge acquired from the source domain. This paper presents two quantum implementations of domain adaptation classifiers that achieve quantum speedup compared to classical classifiers. One implementation uses quantum basic linear algebra subroutines to predict labels with logarithmic resources. The other implementation efficiently accomplishes the domain adaptation task through a variational hybrid quantum-classical procedure.
QUANTUM INFORMATION PROCESSING
(2023)
Review
Agriculture, Dairy & Animal Science
Bing Wang, Huizeng Sun, Diming Wang, Hongyun Liu, Jianxin Liu
Summary: This review provides a comprehensive overview of the limitations of cereal straw in lactating dairy cows and highlights the importance of developing new strategies to enhance its utilization. The study reveals molecular mechanisms using multi-omics techniques that can be targeted to improve the utilization of cereal straw by dairy cows. Additionally, efficient countermeasures and dietary formulations can increase the feeding and economic value of cereal straw.
Article
Microbiology
Yunyi Xie, Huizeng Sun, Mingyuan Xue, Jianxin Liu
Summary: This study analysed the relationship between rumen microbiota and residual feed intake (RFI) in Holstein cows. The results showed that high RFI cows had higher relative abundances of butyrate producers and certain carbohydrate metabolic pathways. Quorum sensing and DNA replication pathways were also more abundant in high RFI cows. In addition, low RFI cows had lower abundances of methane-producing bacteria and methanogenesis functions. These findings provide a deeper understanding of the microbial ecology of dairy cows and suggest that modulating the rumen microbiome or microbial functions could improve feed efficiency.
Article
Microbiology
Ming-Yuan Xue, Yun-Yi Xie, Yi-Fan Zhong, Jian-Xin Liu, Le Luo Guan, Hui-Zeng Sun
Summary: The study revealed the prevalence of ARGs in the rumen of lactating dairy cows. The ruminal resistome is not associated with host feed intake, but it may potentially be linked to milk protein yield in dairy cows. The results provide fundamental knowledge on the prevalence, mechanisms, and impact factors of antimicrobial resistance in dairy cattle, which is important for antimicrobial resistance control strategies in the dairy industry and other food animal industries.
Article
Microbiology
Hui-Zeng Sun, Ke-Lan Peng, Ming-Yuan Xue, Jian-Xin Liu
Summary: This study compared the rumen microbiome and resistome between dairy cows and dairy buffaloes, revealing distinctive microbiome and unique ARGs in dairy buffaloes. The findings highlight the importance of understanding and developing strategies to prevent the transmission of ARGs in livestock.
Article
Biochemical Research Methods
Tanushree Halder, Elke Stroeher, Hui Liu, Yinglong Chen, Guijun Yan, Kadambot H. M. Siddique
Summary: Improving the root system of wheat is crucial for enhancing grain yield and climate resilience. This study identified proteins associated with root length and root mass in wheat using label-free quantitative proteomics. The findings revealed potential biomarkers that could be used for improving the root system of wheat.
JOURNAL OF PROTEOMICS
(2024)
Article
Biochemical Research Methods
Yinhua Pan, Quanqing Zou, Wu Yin, Zhen Huang, Yingzhu Zhao, Zongming Mo, Lihui Li, Jianrong Yang
Summary: A prognostic model of BC based on LNM-related genes was established in this study, providing guidance for prognosis evaluation and precise treatment of BC. The genes related to lymph node metastasis in BC are largely unknown and need further exploration. Searching for potential lymph node metastasis-related genes of BC will provide meaningful biomarkers for BC treatment. Our model, based on TCGA-BRCA data, effectively predicted patient outcomes and classified BC patients. The identified feature genes might have a predictive function in immunotherapy. The results of this study provide a new reference for the prognosis and treatment of BC patients with lymph node metastasis.
JOURNAL OF PROTEOMICS
(2024)
Article
Biochemical Research Methods
Qiushi Liang, Joon M. Pijnenburg, Erikjan Rijkers, Arnold G. Vulto, Ans T. van der Ploeg, Niek P. van Til, Eva C. Vlaar, Jeroen A. A. Demmers, W. W. M. Pim Pijnappel
Summary: Pompe disease is a lysosomal storage disorder characterized by glycogen accumulation in skeletal muscle, leading to profound pathology. This study showed that lentiviral gene therapy with LV-IGF2.GAAco can nearly completely correct disease-associated proteomic changes, supporting its future clinical development as a new treatment option for Pompe disease.
JOURNAL OF PROTEOMICS
(2024)
Article
Biochemical Research Methods
Chuang Liu, Wenjing Zhang, Qianli Dong, Haipeng Liu
Summary: This study fills the knowledge gap about the matrix proteins involved in the formation of mineralized exoskeletons in decapod crustaceans. By comparing with well-studied molluscan biomineralization proteins, it is proposed that decapod crustaceans evolved novel proteins while sharing some proteins with molluscs. This study provides insights into the evolution and adaptation of crustaceans and molluscs in forming their exoskeletons.
JOURNAL OF PROTEOMICS
(2024)
Article
Biochemical Research Methods
Rania D. Baka, Josipa Kules, Angelo Beletic, Vladimir Farkas, Dina Resetar Maslov, Blanka Beer Ljubic, Ivana Rubic, Vladimir Mrljak, Mark McLaughlin, David Eckersall, Zoe Polizopoulou
Summary: This study analyzed serum samples from dogs with epilepsy and identified potential markers of epilepsy, proteins involved in nerve tissue regeneration, and proteins altered by antiepileptic medication. The findings provide insight into the pathogenesis of epilepsy and the effects of medication on extracellular matrix proteins.
JOURNAL OF PROTEOMICS
(2024)
Article
Biochemical Research Methods
Viviane M. Codognoto, Fabiana F. de Souza, Thais R. Cataldi, Carlos A. Labate, Laiza S. de Camargo, Pedro H. Esteves Trindade, Roberto R. da Rosa Filho, Diego J. B. de Oliveira, Eunice Oba
Summary: This study aimed to compare urine proteomics from non- and pregnant buffaloes to identify potential biomarkers of early pregnancy. A total of 798 proteins were reported in the urine considering all groups, and the differential proteins play essential roles during pregnancy.
JOURNAL OF PROTEOMICS
(2024)