PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective

Interactive phenotyping of large-scale histology imaging data with HistomicsML

(2017) Michael Nalisnik et al.   Scientific Reports

Vemurafenib in patients with BRAFV600E-positive metastatic or unresectable papillary thyroid cancer refractory to radioactive iodine: a non-randomised, multicentre, open-label, phase 2 trial

(2016) Marcia S Brose et al.   LANCET ONCOLOGY

Morphological characterization of colorectal cancers in The Cancer Genome Atlas reveals distinct morphology–molecular associations: clinical and biological implications

(2016) Jinru Shia et al.   MODERN PATHOLOGY

Classification of follicular lymphoma: the effect of computer aid on pathologists grading

(2015) Mohammad Faizal Ahmad Fauzi et al.   BMC Medical Informatics and Decision Making

Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer

(2015) Giovanni Ciriello et al.   CELL

Genomic Classification of Cutaneous Melanoma

(2015) Rehan Akbani et al.   CELL

Clinical Acquired Resistance to RAF Inhibitor Combinations in BRAF-Mutant Colorectal Cancer through MAPK Pathway Alterations

(2015) L. G. Ahronian et al.   Cancer Discovery

Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin

(2014) Katherine A. Hoadley et al.   CELL

Screening for Cervical Cancer Using Automated Analysis of PAP-Smears

(2014) Ewert Bengtsson et al.   Computational and Mathematical Methods in Medicine

Comprehensive molecular characterization of urothelial bladder carcinoma

(2014)   NATURE

The Evolution of Melanoma Resistance Reveals Therapeutic Opportunities

(2013) M. D. Thakur et al.   CANCER RESEARCH

Statistical shape model for manifold regularization: Gleason grading of prostate histology

(2013) Rachel Sparks et al.   COMPUTER VISION AND IMAGE UNDERSTANDING

Identifying survival associated morphological features of triple negative breast cancer using multiple datasets

(2013) Chao Wang et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

(2013) David A Gutman et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Pan-cancer patterns of somatic copy number alteration

(2013) Travis I Zack et al.   NATURE GENETICS

Emerging landscape of oncogenic signatures across human cancers

(2013) Giovanni Ciriello et al.   NATURE GENETICS

The Cancer Genome Atlas Pan-Cancer analysis project

(2013) John N Weinstein et al.   NATURE GENETICS

The Tumor Microenvironment Strongly Impacts Master Transcriptional Regulators and Gene Expression Class of Glioblastoma

(2012) Lee A.D. Cooper et al.   AMERICAN JOURNAL OF PATHOLOGY

Unresponsiveness of colon cancer to BRAF(V600E) inhibition through feedback activation of EGFR

(2012) Anirudh Prahallad et al.   NATURE

Comprehensive molecular characterization of human colon and rectal cancer

(2012)   NATURE

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Combined BRAF and MEK Inhibition in Melanoma with BRAF V600 Mutations

(2012) Keith T. Flaherty et al.   NEW ENGLAND JOURNAL OF MEDICINE

EGFR-Mediated Reactivation of MAPK Signaling Contributes to Insensitivity of BRAF -Mutant Colorectal Cancers to RAF Inhibition with Vemurafenib

(2012) Ryan B. Corcoran et al.   Cancer Discovery

Improved Survival with Vemurafenib in Melanoma with BRAF V600E Mutation

(2011) Paul B. Chapman et al.   NEW ENGLAND JOURNAL OF MEDICINE

Systematic Analysis of Breast Cancer Morphology Uncovers Stromal Features Associated with Survival

(2011) A. H. Beck et al.   Science Translational Medicine

Core classification of lung cancer: Correlating nuclear size and mitoses with ploidy and clinicopathological parameters

(2009) Iver Petersen et al.   LUNG CANCER