Transcriptomic Analysis of CD4+T Cells Reveals Novel Immune Signatures of Latent Tuberculosis

Characterization ofMycobacterium tuberculosis–Specific Cells Using MHC Class II Tetramers Reveals Phenotypic Differences Related to HIV Infection and Tuberculosis Disease

(2017) Natalie Strickland et al.   JOURNAL OF IMMUNOLOGY

Do Memory CD4 T Cells Keep Their Cell-Type Programming: Plasticity versus Fate Commitment?

(2017) Federica Sallusto et al.   Cold Spring Harbor Perspectives in Biology

Unique phenotypes and clonal expansions of human CD4 effector memory T cells re-expressing CD45RA

(2017) Yuan Tian et al.   Nature Communications

Analysis of the Phenotype of Mycobacterium tuberculosis-Specific CD4+ T Cells to Discriminate Latent from Active Tuberculosis in HIV-Uninfected and HIV-Infected Individuals

(2017) Catherine Riou et al.   Frontiers in Immunology

Quantitative and qualitative profiles of circulating monocytes may help identifying tuberculosis infection and disease stages

(2017) Marco Pio La Manna et al.   PLoS One

Comparative analysis of activation induced marker (AIM) assays for sensitive identification of antigen-specific CD4 T cells

(2017) Samantha Reiss et al.   PLoS One

Heterogeneity of Human CD4+T Cells Against Microbes

(2016) Federica Sallusto   Annual Review of Immunology

A 380-gene meta-signature of active tuberculosis compared with healthy controls

(2016) Simon Blankley et al.   EUROPEAN RESPIRATORY JOURNAL

Transcriptional Profiling of Th2 Cells Identifies Pathogenic Features Associated with Asthma

(2016) Grégory Seumois et al.   JOURNAL OF IMMUNOLOGY

A blood RNA signature for tuberculosis disease risk: a prospective cohort study

(2016) Daniel E Zak et al.   LANCET

Polyfunctional CD4 T-cells correlate with in vitro mycobacterial growth inhibition following Mycobacterium bovis BCG-vaccination of infants

(2016) Steven G. Smith et al.   VACCINE

T-cell activation is an immune correlate of risk in BCG vaccinated infants

(2016) Helen A. Fletcher et al.   Nature Communications

A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans

(2016) Cecilia S. Lindestam Arlehamn et al.   PLoS Pathogens

Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis

(2016) Timothy E Sweeney et al.   Lancet Respiratory Medicine

New Genome-Wide Algorithm Identifies Novel In-Vivo Expressed Mycobacterium Tuberculosis Antigens Inducing Human T-Cell Responses with Classical and Unconventional Cytokine Profiles

(2016) Mariateresa Coppola et al.   Scientific Reports

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Pro-inflammatory human Th17 cells selectively express P-glycoprotein and are refractory to glucocorticoids

(2014) Radha Ramesh et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Transcriptional Profile of Tuberculosis Antigen–Specific T Cells Reveals Novel Multifunctional Features

(2014) Cecilia Lindestam Arlehamn et al.   JOURNAL OF IMMUNOLOGY

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

Diagnosis of Childhood Tuberculosis and Host RNA Expression in Africa

(2014) Suzanne T. Anderson et al.   NEW ENGLAND JOURNAL OF MEDICINE

IL-32 is a molecular marker of a host defense network in human tuberculosis

(2014) D. Montoya et al.   Science Translational Medicine

The who's who of T-cell differentiation: Human memory T-cell subsets

(2013) Yolanda D. Mahnke et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Detection of Tuberculosis in HIV-Infected and -Uninfected African Adults Using Whole Blood RNA Expression Signatures: A Case-Control Study

(2013) Myrsini Kaforou et al.   PLOS MEDICINE

Memory T Cells in Latent Mycobacterium tuberculosis Infection Are Directed against Three Antigenic Islands and Largely Contained in a CXCR3+CCR6+ Th1 Subset

(2013) Cecilia S. Lindestam Arlehamn et al.   PLoS Pathogens

Multifunctional CD4 T Cell Responses in Patients with Active Tuberculosis

(2012) Zhengang Qiu et al.   Scientific Reports

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Emerging functions of c-kit and its ligand stem cell factor in dendritic cells

(2011) Prabir Ray et al.   CELL CYCLE

Mycobacterium tuberculosis Culture Filtrate Protein 10-Specific Effector/Memory CD4+and CD8+T Cells in Tubercular Pleural Fluid, with Biased Usage of T Cell Receptor Vβ Chains

(2011) Dan Qiao et al.   INFECTION AND IMMUNITY

Gene expression profiling of CD8+ T cells predicts prognosis in patients with Crohn disease and ulcerative colitis

(2011) James C. Lee et al.   JOURNAL OF CLINICAL INVESTIGATION

Dominant TNF-α+ Mycobacterium tuberculosis–specific CD4+ T cell responses discriminate between latent infection and active disease

(2011) Alexandre Harari et al.   NATURE MEDICINE

CCL20 is overexpressed in Mycobacterium tuberculosis-infected monocytes and inhibits the production of reactive oxygen species (ROS)

(2010) O. M. Rivero-Lezcano et al.   CLINICAL AND EXPERIMENTAL IMMUNOLOGY

Multifunctional CD4+ T cells correlate with active Mycobacterium tuberculosis infection

(2010) Nadia Caccamo et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Human gene expression profiles of susceptibility and resistance in tuberculosis

(2010) J Maertzdorf et al.   GENES AND IMMUNITY

Transcriptional Profiling of CD4 T Cells Identifies Distinct Subgroups of HIV-1 Elite Controllers

(2010) F. Vigneault et al.   JOURNAL OF VIROLOGY

An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis

(2010) Matthew P. R. Berry et al.   NATURE

Novel expression signatures identified by transcriptional analysis of separated leucocyte subsets in systemic lupus erythematosus and vasculitis

(2009) P. A. Lyons et al.   ANNALS OF THE RHEUMATIC DISEASES

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Activation of c-Kit in dendritic cells regulates T helper cell differentiation and allergic asthma

(2008) Nandini Krishnamoorthy et al.   NATURE MEDICINE