A clash of ideas – the varying uses of the ‘species’ term in virology and their utility for classifying viruses in metagenomic datasets

Virus taxonomy in the age of metagenomics

(2017) Peter Simmonds et al.   NATURE REVIEWS MICROBIOLOGY

Evolution of selective-sequencing approaches for virus discovery and virome analysis

(2017) Arvind Kumar et al.   VIRUS RESEARCH

Characterization of Viral Populations by Using Circular Sequencing

(2016) Zachary J. Whitfield et al.   JOURNAL OF VIROLOGY

International Code of Nomenclature of Prokaryotes

(2015) Charles T Parker et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Methods for virus classification and the challenge of incorporating metagenomic sequence data

(2015) P. Simmonds   JOURNAL OF GENERAL VIROLOGY

Classifying the uncultivated microbial majority: A place for metagenomic data in the Candidatus proposal

(2015) Konstantinos T. Konstantinidis et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The changing landscape of microbial biodiversity exploration and its implications for systematics

(2015) Brian P. Hedlund et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Viruses and cells intertwined since the dawn of evolution

(2015) Julia Durzyńska et al.   Virology Journal

Consensus proposals for classification of the family Hepeviridae

(2014) D. B. Smith et al.   JOURNAL OF GENERAL VIROLOGY

Library preparation for highly accurate population sequencing of RNA viruses

(2014) Ashley Acevedo et al.   Nature Protocols

Fungal systematics: is a new age of enlightenment at hand?

(2013) David S. Hibbett et al.   NATURE REVIEWS MICROBIOLOGY

Plant Virus Metagenomics: Biodiversity and Ecology

(2012) Marilyn J. Roossinck   Annual Review of Genetics

Exploring the viral world through metagenomics

(2011) Karyna Rosario et al.   Current Opinion in Virology

Endogenous Viral Elements in Animal Genomes

(2010) Aris Katzourakis et al.   PLoS Genetics

The not so universal tree of life or the place of viruses in the living world

(2009) H. Brussow   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES