Recent Positive Selection Has Acted on Genes Encoding Proteins with More Interactions within the Whole Human Interactome

Fisher’s Geometrical Model Emerges as a Property of Complex Integrated Phenotypic Networks

(2014) Guillaume Martin   GENETICS

Genome-wide signals of positive selection in human evolution

(2014) D. Enard et al.   GENOME RESEARCH

Identifying Recent Adaptations in Large-Scale Genomic Data

(2013) Sharon R. Grossman et al.   CELL

Significance of Population Size on the Fixation of Nonsynonymous Mutations in Genes Under Varying Levels of Selection Pressure

(2013) S. Subramanian   GENETICS

Gene expression drives local adaptation in humans

(2013) H. B. Fraser   GENOME RESEARCH

A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines

(2013) L. Liang et al.   GENOME RESEARCH

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans

(2013) Marc Pybus et al.   NUCLEIC ACIDS RESEARCH

A Conserved Mammalian Protein Interaction Network

(2013) Åsa Pérez-Bercoff et al.   PLoS One

Attack Robustness and Centrality of Complex Networks

(2013) Swami Iyer et al.   PLoS One

Interpretation of Genomic Variants Using a Unified Biological Network Approach

(2013) Ekta Khurana et al.   PLoS Computational Biology

The relationship between the hierarchical position of proteins in the human signal transduction network and their rate of evolution

(2012) David Alvarez-Ponce   BMC EVOLUTIONARY BIOLOGY

Distribution of events of positive selection and population differentiation in a metabolic pathway: the case of asparagine N-glycosylation

(2012) Giovanni Dall’Olio et al.   BMC EVOLUTIONARY BIOLOGY

THE EVOLUTION OF GENES IN BRANCHED METABOLIC PATHWAYS

(2012) Mark D. Rausher   EVOLUTION

Evolutionary Rate and Duplicability in the Arabidopsis thaliana Protein–Protein Interaction Network

(2012) David Alvarez-Ponce et al.   Genome Biology and Evolution

Evolution of Flux Control in the Glucosinolate Pathway in Arabidopsis thaliana

(2012) Carrie F. Olson-Manning et al.   MOLECULAR BIOLOGY AND EVOLUTION

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Adaptive evolution: evaluating empirical support for theoretical predictions

(2012) Carrie F. Olson-Manning et al.   NATURE REVIEWS GENETICS

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

(2012) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes

(2012) D. G. MacArthur et al.   SCIENCE

Network-Level and Population Genetics Analysis of the Insulin/TOR Signal Transduction Pathway Across Human Populations

(2011) P. Luisi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

(2011) Paul J. Kersey et al.   NUCLEIC ACIDS RESEARCH

Classic Selective Sweeps Were Rare in Recent Human Evolution

(2011) R. D. Hernandez et al.   SCIENCE

Red Queen: from populations to taxa and communities

(2011) Lee Hsiang Liow et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptations to Climate-Mediated Selective Pressures in Humans

(2011) Angela M. Hancock et al.   PLoS Genetics

The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation

(2010) Jonathan K. Pritchard et al.   CURRENT BIOLOGY

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

An Integrated View of Molecular Coevolution in Protein-Protein Interactions

(2010) S. C. Lovell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Understanding mechanisms underlying human gene expression variation with RNA sequencing

(2010) Joseph K. Pickrell et al.   NATURE

The BioGRID Interaction Database: 2011 update

(2010) C. Stark et al.   NUCLEIC ACIDS RESEARCH

A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection

(2010) S. R. Grossman et al.   SCIENCE

Protein evolution on a human signaling network

(2009) Qinghua Cui et al.   BMC Systems Biology

More radical amino acid replacements in primates than in rodents: Support for the evolutionary role of effective population size

(2009) Austin L. Hughes et al.   GENE

The Evolution of Control and Distribution of Adaptive Mutations in a Metabolic Pathway

(2009) K. M. Wright et al.   GENETICS

Population Genomic Analysis of ALMS1 in Humans Reveals a Surprisingly Complex Evolutionary History

(2009) Laura B. Scheinfeldt et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl's 10th year

(2009) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

The Role of Geography in Human Adaptation

(2009) Graham Coop et al.   PLoS Genetics

An Investigation of the Statistical Power of Neutrality Tests Based on Comparative and Population Genetic Data

(2008) W. Zhai et al.   MOLECULAR BIOLOGY AND EVOLUTION

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH

Null mutations in human and mouse orthologs frequently result in different phenotypes

(2008) B.-Y. Liao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Patterns of Positive Selection in Six Mammalian Genomes

(2008) Carolin Kosiol et al.   PLoS Genetics