The Evolution of Bony Vertebrate Enhancers at Odds with Their Coding Sequence Landscape

Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers

(2013) Nazia Parveen et al.   BMC GENOMICS

The African coelacanth genome provides insights into tetrapod evolution

(2013) Chris T. Amemiya et al.   NATURE

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny: Rewriting evolution

(2012) Elie Dolgin   NATURE

UCNEbase—a database of ultraconserved non-coding elements and genomic regulatory blocks

(2012) Slavica Dimitrieva et al.   NUCLEIC ACIDS RESEARCH

Evolution of vertebrate appendicular structures: Insight from genetic and palaeontological data

(2011) Amir Ali Abbasi   DEVELOPMENTAL DYNAMICS

cis-regulatory mutations are a genetic cause of human limb malformations

(2011) Julia E. VanderMeer et al.   DEVELOPMENTAL DYNAMICS

RATES OF MORPHOLOGICAL EVOLUTION ARE CORRELATED WITH SPECIES RICHNESS IN SALAMANDERS

(2011) Daniel L. Rabosky et al.   EVOLUTION

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomics of Long-Range Regulatory Elements

(2010) James P. Noonan et al.   Annual Review of Genomics and Human Genetics

Human intronic enhancers control distinct sub-domains of Gli3 expression during mouse CNS and limb development

(2010) Amir A Abbasi et al.   BMC DEVELOPMENTAL BIOLOGY

Variants in RET Associated With Hirschsprung's Disease Affect Binding of Transcription Factors and Gene Expression

(2010) Yunia Sribudiani et al.   GASTROENTEROLOGY

Ancient Vertebrate Conserved Noncoding Elements Have Been Evolving Rapidly in Teleost Fishes

(2010) A. P. Lee et al.   MOLECULAR BIOLOGY AND EVOLUTION

The UCSC Genome Browser database: update 2011

(2010) P. A. Fujita et al.   NUCLEIC ACIDS RESEARCH

8q24 prostate, breast, and colon cancer risk loci show tissue-specific long-range interaction with MYC

(2010) N. Ahmadiyeh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion

(2009) Kevin J. Peterson et al.   BIOESSAYS

ChIP-seq accurately predicts tissue-specific activity of enhancers

(2009) Axel Visel et al.   NATURE

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Large Number of Ultraconserved Elements Were Already Present in the Jawed Vertebrate Ancestor

(2008) J. Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome analysis of the platypus reveals unique signatures of evolution

(2008) Wesley C. Warren et al.   NATURE

Ultraconservation identifies a small subset of extremely constrained developmental enhancers

(2008) Axel Visel et al.   NATURE GENETICS

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Appearance of Ultraconserved Elements in Tetrapod Genomes and Slowdown of the Molecular Clock

(2007) S. Stephen et al.   MOLECULAR BIOLOGY AND EVOLUTION