Whole-Genome Sequencing of Six Mauritian Cynomolgus Macaques (Macaca fascicularis) Reveals a Genome-Wide Pattern of Polymorphisms under Extreme Population Bottleneck

No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans

(2015) Ron Do et al.   NATURE GENETICS

Genetic substructure in cynomolgus macaques (Macaca fascicularis) on the island of Mauritius

(2014) Lisa M Ogawa et al.   BMC GENOMICS

Complete Characterization of Killer Ig-Like Receptor (KIR) Haplotypes in Mauritian Cynomolgus Macaques: Novel Insights into Nonhuman Primate KIR Gene Content and Organization

(2014) B. N. Bimber et al.   JOURNAL OF IMMUNOLOGY

Whole-Genome Sequencing of Tibetan Macaque (Macaca thibetana) Provides New Insight into the Macaque Evolutionary History

(2014) Zhenxin Fan et al.   MOLECULAR BIOLOGY AND EVOLUTION

The deleterious mutation load is insensitive to recent population history

(2014) Yuval B Simons et al.   NATURE GENETICS

The Impact of Population Demography and Selection on the Genetic Architecture of Complex Traits

(2014) Kirk E. Lohmueller   PLoS Genetics

Finding the Factors of Reduced Genetic Diversity on X Chromosomes of Macaca fascicularis : Male-Driven Evolution, Demography, and Natural Selection

(2013) Naoki Osada et al.   GENETICS

Deleterious impact of feto-maternal MHC compatibility on the success of pregnancy in a macaque model

(2013) Alice Aarnink et al.   IMMUNOGENETICS

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Great ape genetic diversity and population history

(2013) Javier Prado-Martinez et al.   NATURE

Ensembl 2014

(2013) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Population and Landscape Genetics of an Introduced Species (M. fascicularis) on the Island of Mauritius

(2013) Jessica Satkoski Trask et al.   PLoS One

Comparative analysis in cynomolgus macaque identifies a novel human MHC locus controlling platelet blood counts independently of BAK1

(2012) A. Aarnink et al.   JOURNAL OF THROMBOSIS AND HAEMOSTASIS

Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes

(2012) Jennifer F. Hughes et al.   NATURE

Use of Cumulative Poisson Probability Distribution as an Estimator of the Recombination Rate in an Expanding Population: Example of the Macaca fascicularis Major Histocompatibility Complex

(2012) Antoine Blancher et al.   G3-Genes Genomes Genetics

Whole-genome sequencing and analysis of the Malaysian cynomolgus macaque (Macaca fascicularis) genome

(2012) Atsunori Higashino et al.   GENOME BIOLOGY

Genome-based analysis of the nonhuman primate Macaca fascicularis as a model for drug safety assessment

(2011) M. Ebeling et al.   GENOME RESEARCH

Characterization of MHC class I transcripts of a Malaysian cynomolgus macaque by high-throughput pyrosequencing and EST libraries

(2011) Alice Aarnink et al.   IMMUNOGENETICS

Influence of the MHC genotype on the progression of experimental SIV infection in the Mauritian cynomolgus macaque

(2011) Alice Aarnink et al.   IMMUNOGENETICS

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques

(2011) Guangmei Yan et al.   NATURE BIOTECHNOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Impact of MHC class II polymorphism on blood counts of CD4+ T lymphocytes in macaque

(2010) Alice Aarnink et al.   IMMUNOGENETICS

Characterization of Mauritian cynomolgus macaque major histocompatibility complex class I haplotypes by high-resolution pyrosequencing

(2010) Melisa L. Budde et al.   IMMUNOGENETICS

Ancient genome-wide admixture extends beyond the current hybrid zone between Macaca fascicularis and M. mulatta

(2010) NAOKI OSADA et al.   MOLECULAR ECOLOGY

Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing

(2010) Akihiro Fujimoto et al.   NATURE GENETICS

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

The unique value of primate models in translational research

(2009) Carol A. Shively et al.   AMERICAN JOURNAL OF PRIMATOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Targets of Balancing Selection in the Human Genome

(2009) A. M. Andres et al.   MOLECULAR BIOLOGY AND EVOLUTION

Divergence population genetic analysis of hybridization between rhesus and cynomolgus macaques

(2009) LAURIE S. STEVISON et al.   MOLECULAR ECOLOGY

Hybridization and Stratification of Nuclear Genetic Variation in Macaca mulatta and M. fascicularis

(2008) Sree Kanthaswamy et al.   INTERNATIONAL JOURNAL OF PRIMATOLOGY

Mitochondrial DNA Sequence Phylogeny of 4 Populations of the Widely Distributed Cynomolgus Macaque (Macaca fascicularis fascicularis)

(2008) A. Blancher et al.   JOURNAL OF HEREDITY

Assessing Natural Introgression in 2 Biomedical Model Species, the Rhesus Macaque (Macaca mulatta) and the Long-Tailed Macaque (Macaca fascicularis)

(2008) M. Bonhomme et al.   JOURNAL OF HEREDITY

MHC haplotype frequencies in a UK breeding colony of Mauritian cynomolgus macaques mirror those found in a distinct population from the same geographic origin

(2008) Edward T. Mee et al.   JOURNAL OF MEDICAL PRIMATOLOGY

Origin and number of founders in an introduced insular primate: estimation from nuclear genetic data

(2008) M. BONHOMME et al.   MOLECULAR ECOLOGY