The Evolutionary Fate of Alternatively Spliced Homologous Exons after Gene Duplication

Evidence for widespread subfunctionalization of splice forms in vertebrate genomes

(2015) Matthew J. Lambert et al.   GENOME RESEARCH

Multiple Phenotypes in Phosphoglucomutase 1 Deficiency

(2014) Laura C. Tegtmeyer et al.   NEW ENGLAND JOURNAL OF MEDICINE

The SLC8 gene family of sodium–calcium exchangers (NCX) – Structure, function, and regulation in health and disease

(2013) Daniel Khananshvili   MOLECULAR ASPECTS OF MEDICINE

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The African coelacanth genome provides insights into tetrapod evolution

(2013) Chris T. Amemiya et al.   NATURE

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution

(2013) Jeramiah J Smith et al.   NATURE GENETICS

Alternative Splicing and Subfunctionalization Generates Functional Diversity in Fungal Proteomes

(2013) Alexandra N. Marshall et al.   PLoS Genetics

Alternative splicing: Functional diversity among voltage-gated calcium channels and behavioral consequences

(2012) Diane Lipscombe et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

A Liver Full of JNK: Signaling in Regulation of Cell Function and Disease Pathogenesis, and Clinical Approaches

(2012) Ekihiro Seki et al.   GASTROENTEROLOGY

Revisit on the evolutionary relationship between alternative splicing and gene duplication

(2012) Zhixi Su et al.   GENE

Comparative Proteomics Reveals a Significant Bias Toward Alternative Protein Isoforms with Conserved Structure and Function

(2012) I. Ezkurdia et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

The Intracellular Transport and Secretion of Calumenin-1/2 in Living Cells

(2012) Qiao Wang et al.   PLoS One

Divergence of duplicate genes in exon-intron structure

(2012) G. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TimeTree2: species divergence times on the iPhone

(2011) S. Kumar et al.   BIOINFORMATICS

Downregulation of tight junction-associated MARVEL protein marvelD3 during epithelial–mesenchymal transition in human pancreatic cancer cells

(2011) Takashi Kojima et al.   EXPERIMENTAL CELL RESEARCH

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

(2011) Angel Amores et al.   GENETICS

Specific Regulation of NRG1 Isoform Expression by Neuronal Activity

(2011) X. Liu et al.   JOURNAL OF NEUROSCIENCE

The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates

(2011) J. M. Mudge et al.   MOLECULAR BIOLOGY AND EVOLUTION

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Exon-Based Clustering of Murine Breast Tumor Transcriptomes Reveals Alternative Exons Whose Expression Is Associated with Metastasis

(2010) M. Dutertre et al.   CANCER RESEARCH

Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication

(2010) J. Roux et al.   GENOME RESEARCH

Extensive Divergence in Alternative Splicing Patterns after Gene and Genome Duplication During the Evolutionary History of Arabidopsis

(2010) P. G. Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of gene duplications: classifying and distinguishing between models

(2010) Hideki Innan et al.   NATURE REVIEWS GENETICS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The rapidly expanding CREC protein family: members, localization, function, and role in disease

(2009) Bent Honoré   BIOESSAYS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes

(2009) K. D. Pruitt et al.   GENOME RESEARCH

A Novel Endoplasmic Reticulum Export Signal

(2009) Yoshinori Tsukumo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Claudin-10 exists in six alternatively spliced isoforms that exhibit distinct localization and function

(2009) D. Gunzel et al.   JOURNAL OF CELL SCIENCE

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Differential expression of exon 5 splice variants of sodium channel α subunit mRNAs in the developing mouse brain

(2009) E.V. Gazina et al.   NEUROSCIENCE

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

Turning a hobby into a job: How duplicated genes find new functions

(2008) Gavin C. Conant et al.   NATURE REVIEWS GENETICS