Phylogenetic clustering of small low nucleic acid-content bacteria across diverse freshwater ecosystems
出版年份 2018 全文链接
标题
Phylogenetic clustering of small low nucleic acid-content bacteria across diverse freshwater ecosystems
作者
关键词
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出版物
ISME Journal
Volume 12, Issue 5, Pages 1344-1359
出版商
Springer Nature
发表日期
2018-02-01
DOI
10.1038/s41396-018-0070-8
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria
- (2017) Stefan M Neuenschwander et al. ISME Journal
- Unusual metabolic diversity of hyperalkaliphilic microbial communities associated with subterranean serpentinization at The Cedars
- (2017) Shino Suzuki et al. ISME Journal
- Flow cytometric bacterial cell counts challenge conventional heterotrophic plate counts for routine microbiological drinking water monitoring
- (2017) S. Van Nevel et al. WATER RESEARCH
- Assessing biosynthetic potential of agricultural groundwater through metagenomic sequencing: A diverse anammox community dominates nitrate-rich groundwater
- (2017) William B. Ludington et al. PLoS One
- Species-sorting and mass-transfer paradigms control managed natural metacommunities
- (2016) Susanne Günther et al. ENVIRONMENTAL MICROBIOLOGY
- Measurement of bacterial replication rates in microbial communities
- (2016) Christopher T Brown et al. NATURE BIOTECHNOLOGY
- Impact of Treated Sewage Effluent on the Microbiology of a Small Brook Using Flow Cytometry as a Diagnostic Tool
- (2016) Ibiye S. K. Harry et al. WATER AIR AND SOIL POLLUTION
- Measuring the biodiversity of microbial communities by flow cytometry
- (2016) Ruben Props et al. Methods in Ecology and Evolution
- Biofilms in shower hoses – choice of pipe material influences bacterial growth and communities
- (2016) Caitlin R. Proctor et al. Environmental Science-Water Research & Technology
- Exploiting rRNA operon copy number to investigate bacterial reproductive strategies
- (2016) Benjamin R. K. Roller et al. Nature Microbiology
- Spatio-Temporal Variations of High and Low Nucleic Acid Content Bacteria in an Exorheic River
- (2016) Jie Liu et al. PLoS One
- Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage
- (2015) Yun Kit Yeoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Unusual biology across a group comprising more than 15% of domain Bacteria
- (2015) Christopher T. Brown et al. NATURE
- Microbiomes in light of traits: A phylogenetic perspective
- (2015) J. B. H. Martiny et al. SCIENCE
- Shedding light on microbial dark matter: a TM6 bacterium as natural endosymbiont of a free-living amoeba
- (2015) Vincent Delafont et al. Environmental Microbiology Reports
- Diverse uncultivated ultra-small bacterial cells in groundwater
- (2015) Birgit Luef et al. Nature Communications
- Fluorescence in situ hybridization and sequential catalyzed reporter deposition (2C-FISH) for the flow cytometric sorting of freshwater ultramicrobacteria
- (2015) Stefan M. Neuenschwander et al. Frontiers in Microbiology
- The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle
- (2015) William C. Nelson et al. Frontiers in Microbiology
- Phylogenetic Differences in Attached and Free-Living Bacterial Communities in a Temperate Coastal Lagoon during Summer, Revealed via High-Throughput 16S rRNA Gene Sequencing
- (2014) Vani Mohit et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- An improved protocol for flow cytometry analysis of phytoplankton cultures and natural samples
- (2014) Dominique Marie et al. CYTOMETRY PART A
- Catchment-scale biogeography of riverine bacterioplankton
- (2014) Daniel S Read et al. ISME Journal
- Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
- (2014) Xuesong He et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Combining flow cytometry and 16S rRNA gene pyrosequencing: A promising approach for drinking water monitoring and characterization
- (2014) E.I. Prest et al. WATER RESEARCH
- The feasibility of automated online flow cytometry for in-situ monitoring of microbial dynamics in aquatic ecosystems
- (2014) Michael D. Besmer et al. Frontiers in Microbiology
- Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone
- (2013) Sangita Ganesh et al. ISME Journal
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- Cytometric fingerprinting for analyzing microbial intracommunity structure variation and identifying subcommunity function
- (2013) Christin Koch et al. Nature Protocols
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
- (2013) J. S. McLean et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Monitoring microbiological changes in drinking water systems using a fast and reproducible flow cytometric method
- (2013) E.I. Prest et al. WATER RESEARCH
- Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla
- (2013) R. S. Kantor et al. mBio
- Community analysis of high- and low-nucleic acid-containing bacteria in NW Mediterranean coastal waters using 16S rDNA pyrosequencing
- (2012) Maria Vila-Costa et al. ENVIRONMENTAL MICROBIOLOGY
- Ultramicrobacteria: Formation of the concept and contribution of ultramicrobacteria to biology
- (2012) V. I. Duda et al. MICROBIOLOGY
- Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
- (2012) Anna Klindworth et al. NUCLEIC ACIDS RESEARCH
- Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla
- (2012) K. C. Wrighton et al. SCIENCE
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- Correlation of Community Dynamics and Process Parameters As a Tool for the Prediction of the Stability of Wastewater Treatment
- (2011) Susanne Günther et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton
- (2011) Manuel Martinez-Garcia et al. ISME Journal
- Metagenomic Analysis of 0.2-μm-Passable Microorganisms in Deep-Sea Hydrothermal Fluid
- (2011) Ryosuke Nakai et al. MARINE BIOTECHNOLOGY
- Extreme genome reduction in symbiotic bacteria
- (2011) John P. McCutcheon et al. NATURE REVIEWS MICROBIOLOGY
- Phylogenetic characterisation of picoplanktonic populations with high and low nucleic acid content in the North Atlantic Ocean
- (2011) Martha Schattenhofer et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Members of candidate divisions OP11, OD1 and SR1 are widespread along the water column of the meromictic Lake Pavin (France)
- (2010) Guillaume Borrel et al. ARCHIVES OF MICROBIOLOGY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Phylogenetic diversity and metagenomics of candidate division OP3
- (2010) Jana Glöckner et al. ENVIRONMENTAL MICROBIOLOGY
- Differential responses ofProchlorococcusand SAR11-dominated bacterioplankton groups to atmospheric dust inputs in the tropical Northeast Atlantic Ocean
- (2010) Polly G. Hill et al. FEMS MICROBIOLOGY LETTERS
- Kinetics of membrane damage to high (HNA) and low (LNA) nucleic acid bacterial clusters in drinking water by ozone, chlorine, chlorine dioxide, monochloramine, ferrate(VI), and permanganate
- (2010) Maaike K. Ramseier et al. WATER RESEARCH
- Isolation and characterization of low nucleic acid (LNA)-content bacteria
- (2009) Yingying Wang et al. ISME Journal
- Phylogenetic Characterization and Prevalence of "Spirobacillus cienkowskii," a Red-Pigmented, Spiral-Shaped Bacterial Pathogen of Freshwater Daphnia Species
- (2008) J. L. M. Rodrigues et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Influence of Size, Shape, and Flexibility on Bacterial Passage through Micropore Membrane Filters
- (2008) Yingying Wang et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study
- (2008) Marc Llirós et al. FEMS MICROBIOLOGY ECOLOGY
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