The Complete Chloroplast Genome Sequence of Tree of Heaven (Ailanthus altissima (Mill.) (Sapindales: Simaroubaceae), an Important Pantropical Tree

Identification and characterisation of RNA editing sites in chloroplast transcripts of einkorn wheat (Triticum monococcum )

(2018) F. Kumbhar et al.   ANNALS OF APPLIED BIOLOGY

The Complete Plastome Sequence of an Antarctic Bryophyte Sanionia uncinata (Hedw.) Loeske

(2018) Mira Park et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Comparative Genomics of the Balsaminaceae Sister Genera Hydrocera triflora and Impatiens pinfanensis

(2018) Zhi-Zhong Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Paeonia ostii

(2018) Shuai Guo et al.   MOLECULES

Complete Chloroplast Genomes of Papaver rhoeas and Papaver orientale: Molecular Structures, Comparative Analysis, and Phylogenetic Analysis

(2018) Jianguo Zhou et al.   MOLECULES

The complete plastome of macaw palm [Acrocomia aculeata (Jacq.) Lodd. ex Mart.] and extensive molecular analyses of the evolution of plastid genes in Arecaceae

(2018) Amanda de Santana Lopes et al.   PLANTA

Plastid Genome Comparative and Phylogenetic Analyses of the Key Genera in Fagaceae: Highlighting the Effect of Codon Composition Bias in Phylogenetic Inference

(2018) Yanci Yang et al.   Frontiers in Plant Science

The complete chloroplast genome sequence of Dodonaea viscosa: comparative and phylogenetic analyses

(2017) Josphat K. Saina et al.   GENETICA

The Complete Chloroplast Genome Sequences of the Medicinal Plant Forsythia suspensa (Oleaceae)

(2017) Wenbin Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Molecular Structure and Phylogenetic Analyses of Complete Chloroplast Genomes of Two Aristolochia Medicinal Species

(2017) Jianguo Zhou et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Complete Chloroplast Genome Sequences of Fritillaria ussuriensis Maxim. and Fritillaria cirrhosa D. Don, and Comparative Analysis with Other Fritillaria Species

(2017) Inkyu Park et al.   MOLECULES

Complete Chloroplast Genome Sequence and Phylogenetic Analysis of the Medicinal Plant Artemisia annua

(2017) Xiaofeng Shen et al.   MOLECULES

The Linum usitatissimum L. plastome reveals atypical structural evolution, new editing sites, and the phylogenetic position of Linaceae within Malpighiales

(2017) Amanda de Santana Lopes et al.   PLANT CELL REPORTS

The Chloroplast Genome Sequence of Scutellaria baicalensis Provides Insight into Intraspecific and Interspecific Chloroplast Genome Diversity in Scutellaria

(2017) Dan Jiang et al.   Genes

Comparative Analysis of the Complete Chloroplast Genome of Four Endangered Herbals of Notopterygium

(2017) Jiao Yang et al.   Genes

The complete chloroplast genome of Cinnamomum camphora and its comparison with related Lauraceae species

(2017) Caihui Chen et al.   PeerJ

The First Chloroplast Genome Sequence of Boswellia sacra, a Resin-Producing Plant in Oman

(2017) Abdul Latif Khan et al.   PLoS One

Complete Chloroplast Genome Sequence of Decaisnea insignis: Genome Organization, Genomic Resources and Comparative Analysis

(2017) Bin Li et al.   Scientific Reports

The Complete Chloroplast Genome Sequence of Ampelopsis: Gene Organization, Comparative Analysis, and Phylogenetic Relationships to Other Angiosperms

(2016) Gurusamy Raman et al.   Frontiers in Plant Science

Comparative Transcriptome and Chloroplast Genome Analyses of Two Related Dipteronia Species

(2016) Tao Zhou et al.   Frontiers in Plant Science

The complete chloroplast genome sequence of Rhus chinensis Mill (Anacardiaceae)

(2016) Yun Sun Lee et al.   Mitochondrial DNA Part B-Resources

Genetic structure of the introduced heaven tree (Ailanthus altissima) in Japan: evidence for two distinct origins with limited admixture

(2015) Hiroyuki Kurokochi et al.   Botany

Complete chloroplast genomic sequence of Citrus platymamma determined by combined analysis of Sanger and NGS data

(2015) Minjee Lee et al.   Horticulture Environment and Biotechnology

The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis

(2015) Xiaohong Yao et al.   PLoS One

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Complete Chloroplast Genome Sequence of Omani Lime (Citrus aurantiifolia) and Comparative Analysis within the Rosids

(2014) Huei-Jiun Su et al.   PLoS One

The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms

(2013) Xuan Yi et al.   Genome Biology and Evolution

Phylogeography of the widespread plantAilanthus altissima(Simaroubaceae) in China indicated by three chloroplast DNA regions

(2013) Yi-Ying LIAO et al.   Journal of Systematics and Evolution

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences

(2011) Juan E. Zalapa et al.   AMERICAN JOURNAL OF BOTANY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Loss of Different Inverted Repeat Copies from the Chloroplast Genomes of Pinaceae and Cupressophytes and Influence of Heterotachy on the Evaluation of Gymnosperm Phylogeny

(2011) Chung-Shien Wu et al.   Genome Biology and Evolution

Comparative Chloroplast Genomes of Pinaceae: Insights into the Mechanism of Diversified Genomic Organizations

(2011) Chung-Shien Wu et al.   Genome Biology and Evolution

RNA Editing Sites Exist in Protein-coding Genes in the Chloroplast Genome of Cycas taitungensis

(2011) Haiyan Chen et al.   Journal of Integrative Plant Biology

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

High-Throughput Sequencing of Three Lemnoideae (Duckweeds) Chloroplast Genomes from Total DNA

(2011) Wenqin Wang et al.   PLoS One

Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

(2010) R. K. Jansen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

A new set of universalde novosequencing primers for extensive coverage of noncoding chloroplast DNA: new opportunities for phylogenetic studies and cpSSR discovery

(2009) DANIEL EBERT et al.   Molecular Ecology Resources

The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments

(2009) J. P. Mower   NUCLEIC ACIDS RESEARCH

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

(2008) Rui-Jiang Wang et al.   BMC EVOLUTIONARY BIOLOGY

Gene rearrangement analysis and ancestral order inference from chloroplast genomes with inverted repeat

(2008) Feng Yue et al.   BMC GENOMICS

Development and characterization of chloroplast microsatellite markers forCryptomeria japonicaD. Don

(2008) T. HIRAO et al.   Molecular Ecology Resources

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae)

(2008) Robert K. Jansen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION