Article
Plant Sciences
Xi Chen, Suping Gao, Ping Shen, Yingqi Liu, Ting Lei, Lisha Shi, Wenji Li, Yurong Li, Xiaofang Yu, Lijuan Yang, Jiani Li
Summary: This study evaluated the genetic diversity and correlation among 85 hybrids of Plumbago auriculata and Plumbago auriculata f. alba using horticultural traits and molecular markers. Seven factors explained 65.171% of the total variance, with leaf morphology and flower morphology as the first two factors. The study provided intermediate materials for future breeding programs.
ACTA PHYSIOLOGIAE PLANTARUM
(2021)
Article
Biochemistry & Molecular Biology
Mei-Fang Song, Yan-Hong Guan, Yue Zhang, Hai-Tao Li, Li-Xia Zhang, Zhong-Lian Zhang
Summary: The medicinal plant Aspidopterys obcordatavar.obcordata, endemic to China, has high genetic diversity mainly due to its intra-population diversity. Two populations, ML and DH, were identified with the highest levels of intra-population diversity and individuals from these populations can serve as excellent germplasm candidates. A combination analysis of ISSRs and SRAPs method is ideal for evaluating the genetic diversity and genetic relationships ofA.obcordatavar.obcordata.
BIOCHEMICAL GENETICS
(2021)
Article
Biology
Najoua Rahali, Islem Yangui, Mohamed Boussaid, Chokri Messaoud
Summary: This study evaluated the genetic variation of Hertia cheirifolia in different bioclimatic and geographic regions in Tunisia using ISSR and SRAP markers. The results showed variation in genetic diversity within populations, but genetic differentiation was not correlated with geographic isolation. This suggests that appropriate strategies for conservation of this species should include limiting anthropic pressure and reducing fragmentation.
Article
Agronomy
Mohammed I. Al-daej, Adel A. Rezk, Mohamed M. El-Malky, Tarek A. Shalaby, Mohamed Ismail
Summary: This paper assessed the genetic diversities of 12 rice genotypes using ISSR and SSR markers, and evaluated their agro-morphological traits. Association mapping revealed significant marker-trait associations, including traits related to grain yield and harvest. These findings can enhance future molecular-based rice-breeding programs.
Article
Agronomy
Limei Yi, Zhixiao Dong, Yu Lei, Junming Zhao, Yanli Xiong, Jian Yang, Yi Xiong, Wenlong Gou, Xiao Ma
Summary: The study utilized SRAP markers to detect genetic variability and structure of 80 prairie grass accessions, finding that they can be grouped into five clusters with three genetic memberships identified. Additionally, a low genetic differentiation was discovered among the accessions, with the North America group showing the highest genetic diversity within clusters.
Article
Plant Sciences
Neda Sadeghpoor, Hosseinali Asadi Gharneh, Mehdi Nasr-Esfahani, Hamed Hassanzadeh Khankahdani, Maryam Golabadi
Summary: This study evaluated genetic diversity and population structure of Iranian melons using various primer pairs and found a high degree of variation among the melons. Several primer pairs were identified as performing the best in assessing genetic diversity. The study also discovered a significant correlation between resistance to melon Fusarium wilt and molecular marker dendrograms. Increasing the number of molecular markers was found to be important for future agricultural and conservation tasks.
FUNCTIONAL PLANT BIOLOGY
(2023)
Article
Plant Sciences
Rae Page, Shuyi Huang, Moshe Ronen, Hanan Sela, Amir Sharon, Sandesh Shrestha, Jesse Poland, Brian J. Steffenson
Summary: New resistance loci for rust diseases have been identified in Ae. longissima, providing potential genetic resources for wheat breeding.
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Biology
Ashwini Prashant Benke, Ram Krishna, Vijay Mahajan, Waquar Akhter Ansari, Amar Jeet Gupta, Anil Khar, Poonam Shelke, A. Thangasamy, T. P. Ahammed Shabeer, Major Singh, Kiran P. Bhagat, Dalasanuru Chandregowda Manjunathagowda
Summary: The study utilized a heuristic core collection approach to select a core set of 46 garlic accessions from India, which showed a wide range of genetic diversity. This core set will be valuable for identifying high yielding elite garlic germplasm lines with specific traits for future genetic improvement.
SAUDI JOURNAL OF BIOLOGICAL SCIENCES
(2021)
Article
Plant Sciences
Neda Sadeghpoor, Hosseinali Asadi Gharneh, Mehdi Nasr-Esfahani, Hamed Hassanzadeh Khankahdani, Maryam Golabadi
Summary: We assessed the genetic diversity and population structure of Iranian melons using 35 primer pairs, including SSR, ISSR, and SRAP markers, along with resistance to melon Fusarium wilt. The results showed high variation among melons when combining ISSR-SSR-SRAP markers. Several markers, including ISSR6, ISSR9, SRAP3, SRAP5, SSR3, and SSR6, performed well in evaluating the genetic diversity of the melon population. The correlation between disease severity and molecular markers was significant, suggesting that increasing the number of molecular markers can be a powerful tool in future agricultural and conservation tasks.
FUNCTIONAL PLANT BIOLOGY
(2023)
Article
Plant Sciences
Naeem Akhtar, Ishfaq Ahmad Hafiz, Muhammad Qasim Hayat, Daniel Potter, Nadeem Akhtar Abbasi, Umer Habib, Adil Hussain, Hina Hafeez, Muhammad Ajmal Bashir, Saad Imran Malik
Summary: The study used ISSR markers to analyze the genetic diversity among nine species of Jasminum from different regions in Pakistan, revealing significant genetic differences among the species. Jasminum sambac and J. humile showed the highest genetic diversity, while J. mesnyi and J. nitidum exhibited the lowest genetic diversity.
Article
Multidisciplinary Sciences
Hanaa S. Omar, Abdullah Al Mutery, Neama H. Osman, Nour El-Houda A. Reyad, Mohamed A. Abou-Zeid
Summary: Wheat plays a significant role among cereals globally, with stem and leaf rust posing major threats to grain quality and yield. This study evaluated the genetic diversity of eighteen Egyptian wheat genotypes using molecular markers and assessed the effectiveness of Cu-chitosan nanoparticles in disease control. Results showed varying levels of resistance among genotypes to stem and leaf rust, with Cu-chitosan nanoparticles playing a critical role in disease management.
Article
Multidisciplinary Sciences
Xiaoyun Wang, Wenlong Gou, Ting Wang, Yanli Xiong, Yi Xiong, Qingqing Yu, Zhixiao Dong, Xiao Ma, Nanqing Liu, Junming Zhao
Summary: The study investigated the genetic diversity and structure of 23 wild centipedegrass accessions using SRAP markers, finding significant genetic diversity and structure and a correlation between genetic distance and geographical distance.
Article
Agronomy
Khalef Al-Ghamedi, Ibrahim Alaraidh, Muhammad Afzal, Mosbah Mahdhi, Zarraq Al-Faifi, Mohammed D. Y. Oteef, Taieb Tounekti, Salem S. Alghamdi, Habib Khemira
Summary: The local coffee accessions in the southern regions of Saudi Arabia exhibit high genetic diversity, with some accessions showing significant genetic divergence. These divergent genotypes should be conserved for use in breeding programs to improve agronomic value and enhance environmental resilience.
Article
Agronomy
Saima Noor, Aish Muhammad, Armghan Shahzad, Iqbal Hussain, Muhammad Zeshan, Kazim Ali, Sania Begum, Muhammad Aqeel, Mian Numan, Raja Mohib Muazzam Naz, Shehla Shoukat, Hina Hafeez, Imdad Ullah Zaid, Ghulam Muhammad Ali
Summary: This study used ISSR markers to characterize and assess the genetic diversity of 14 local banana varieties grown in Pakistan. The results showed significant genetic differences among banana varieties at the molecular level, with the varieties being divided into two distinct groups. Some varieties had unique ISSR bands that can be used for their identification.
Article
Plant Sciences
Pramod Prasad, Rajnikant Thakur, S. C. Bhardwaj, Siddanna Savadi, O. P. Gangwar, Charu Lata, Sneha Adhikari, Subodh Kumar, Sonu Kundu, A. S. Manjul, T. L. Prakasha, Sudhir Navathe, G. M. Hegde, B. C. Game, K. K. Mishra, Hanif Khan, Vikas Gupta, C. N. Mishra, Satish Kumar, Sudheer Kumar, Gyanendra Singh
Summary: Wheat stem rust, caused by Pgt, is a major concern for global wheat production. Understanding the characteristics, genetic diversity, origin, distribution, and evolutionary pattern of Pgt is crucial for managing newly emerging isolates through host resistance. In this study, stem rust occurrence in India and neighboring countries was monitored, Pgt isolates were collected and analyzed for virulence phenotypes and molecular genotypes. Several wheat varieties were found to have complete resistance to multiple Pgt pathotypes.
FRONTIERS IN PLANT SCIENCE
(2023)
Article
Horticulture
P. Heidari, M. Sahebi, E. Azadvari, S. Lawson, M. Rezaei, A. Khadivi
Summary: The study revealed significant phenotypic diversity among 43 accessions of the wild species of cherry plum from Iran, indicating positive correlations between fruit weight and length, leaf length, leaf width, and other parameters. Principal component analysis identified seven components explaining 69.93% of the total variance, while a dendrogram grouped accessions into two main clusters based on measured traits. This study highlights a rich new genetic resource for plum breeding that should be conserved both in situ and ex situ.
EUROPEAN JOURNAL OF HORTICULTURAL SCIENCE
(2022)
Article
Horticulture
Samaneh Hosseinabadi, Alireza Khaleghi, Morteza Akramian, Ali Khadivi
Summary: An optimized in vitro culture system for high-efficiency regeneration of Begonia rex Putz. was developed. The effects of different concentrations and combinations of hormones on callus and direct bud induction, as well as bud proliferation and rooting, were investigated. The results showed that the appropriate hormone combination and concentration can promote the growth and regeneration ability of Begonia rex Putz.
JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY
(2022)
Article
Food Science & Technology
Farhad Mirheidari, Ali Khadivi
Summary: The study revealed significant morphological variation within Seidlitzia rosmarinus populations, including different plant growth habits, leaf dimensions, fruit diameter, and 100-fruits dry weight. Data indicated high diversity within the studied germplasm, possibly due to low gene flow among the accessions.
FOOD SCIENCE & NUTRITION
(2022)
Article
Food Science & Technology
Ali Khadivi, Farhad Mirheidari, Abdolvahid Saeidifar, Younes Moradi
Summary: Mango is a highly valued fruit crop in tropical and subtropical regions. This study evaluated the morphological and pomological diversity of 18 mango genotypes in Iran. Significant differences were found among the genotypes in terms of harvest date, fruit skin color, and fruit dimensions. Fruit weight was positively associated with stone weight and pulp and skin content, indicating their importance in determining fruit weight. Principal component analysis revealed high variability among the genotypes, highlighting the diversity in the germplasm. Seven superior genotypes were recommended for commercial cultivation and breeding programs based on fruit quality traits.
FOOD SCIENCE & NUTRITION
(2022)
Article
Plant Sciences
Mohammad Moradi, Alireza Khaleghi, Ali Khadivi
Summary: In this study, the genetic diversity of wild-growing Crown imperial in Markazi province, Iran, was evaluated. The results showed high genetic variation within populations and low genetic variation among populations. Phenotypic traits such as leaf trichome, flower color, and flower number showed high variation, indicating their ornamental value. Cluster analysis and principal component analysis identified specimens with high genetic variation that can be used in breeding programs. However, the study also revealed that overcollection poses a risk to the wild-growing populations of F. imperialis.
Review
Plant Sciences
Mostafakamal Shams, Ali Khadivi
Summary: Salinity poses a serious threat to agriculture in dry areas, but its impact can vary depending on several factors. Understanding the mechanisms of sodium accumulation and the function of genes involved in transport activity can enhance the salinity tolerance of vegetables related to food security in arid regions.
Article
Food Science & Technology
Ali Khadivi, Farhad Mirheidari, Younes Moradi
Summary: This study evaluated the phenotypic diversity of 69 parsnip accessions and identified 14 promising genotypes with superior root quality. The accessions exhibited high diversity in root shape, length, diameter, weight, and color. Cluster analysis was used to categorize the accessions into two main groups based on morphological traits.
FOOD SCIENCE & NUTRITION
(2023)
Article
Food Science & Technology
Fatemeh Beigi, Ali Khadivi
Summary: This study selected late-flowering genotypes of almond trees with high kernel quality from 198 seedlings. Variabilities were observed among the genotypes based on recorded traits, and a total of 68 late-blooming genotypes were identified. Further analysis led to the identification of 19 promising genotypes for cultivation.
FOOD SCIENCE & NUTRITION
(2023)
Article
Plant Sciences
Somayeh Soveili, Ali Khadivi
Summary: The aim of this study was to identify late-leafing genotypes with high-quality kernels for direct cultivation or as parents in breeding programs. Variability was observed in the studied genotypes, especially in terms of leafing dates, flowering dates, and nut-related traits. Twelve promising late-leafing genotypes were identified and recommended for cultivation in orchards.
Article
Agronomy
Alireza Khaleghi, Ali Khadivi
Summary: This study evaluated 184 wild individual specimens of nitre-bush using 25 morphological traits, and significant individual variations were detected, especially in shrub growth vigor, shoot density, canopy density, and shrub length. Principal component analysis showed a high level of morphological variation among the specimens. Some of the superior specimens with high values in various traits can be utilized in breeding programs.
GENETIC RESOURCES AND CROP EVOLUTION
(2023)
Article
Agronomy
Ali Khadivi, Akram-Sadat Hosseini, Amineh Naderi
Summary: Pomegranate genotypes were selected from the Saveh region in Iran to determine morphological variation and identify promising genotypes based on fruit quality. Significant variations were observed among the measured traits, and principal component analysis identified seven components explaining 78.41% of the total variation. Fruit size components, including fruit diameter, length, neck diameter, crown diameter, peel thickness, and weight, had the greatest effect on genotype separation. One soft-seeded genotype and 21 semi-soft-seeded genotypes were selected for breeding programs, and 10 genotypes with high fruit quality traits were recommended for cultivation in commercial orchards.
GENETIC RESOURCES AND CROP EVOLUTION
(2023)
Article
Multidisciplinary Sciences
Ali Khadivi, Farhad Mirheidari, Younes Moradi
Summary: This study assessed the phenotypic variation of wild Prunus scoparia accessions in Iran and found significant differences in measured traits. Nut and kernel size and weight were positively correlated. Cluster analysis and principal component analysis revealed distinct populations in different regions. The observed variation can be attributed to factors such as cross-pollination, cross-incompatibility, natural hybridization, gene flow, and plant material exchange.
SCIENTIFIC REPORTS
(2023)
Article
Food Science & Technology
Ali Khadivi, Zeinab Mashhadi, Akram-Sadat Hosseini
Summary: This research aimed to identify molecular markers associated with important fruit traits in late-blooming almond genotypes using RAPD and ISSR techniques. The studied genotypes showed significant differences in the measured fruit-related traits. The informative markers identified in this study can be used for population generation and selection of superior genotypes.
FOOD SCIENCE & NUTRITION
(2023)
Article
Plant Sciences
Ali Khadivi
Summary: This study investigated the phenotypic variation of five species of the genus Ziziphus in three provinces of Iran, revealing significant differences in fruit weight and other traits among the species, which are also positively correlated. The results of multiple regression analysis showed that fruit length, stone width, stone weight, stone length, and fruit width have significant effects on fruit weight.
Article
Food Science & Technology
Ali Khadivi, Somayeh Goodarzi, Mostafakamal Shams
Summary: This study examined the genetic diversity and relationship between sweet cherry and sour cherry genotypes based on fruit traits and chloroplast microsatellites. The results showed significant differences in fruit traits between sweet and sour cherries, and the chloroplast microsatellites effectively separated the two types of cherries. This study provides new insights into the diversity and genetic relationship of sweet and sour cherries.
FOOD SCIENCE & NUTRITION
(2023)
Article
Genetics & Heredity
Xiangge Meng, Chengping Li, Yu Hei, Xiang Zhou, Guoli Zhou
Summary: The study used IVT-SAPAS sequencing to analyze the dynamic changes of APA sites during adipogenesis in bovine subcutaneous preadipocytes and intramuscular preadipocytes. The results showed that APA plays an important role in adipocyte differentiation, and UTR-APA switching genes have different trends, with intramuscular preadipocytes tending to use shorter 3'UTR for differentiation. TRIB3, WWTR1, and INSIG1 play important roles in intramuscular preadipocyte differentiation.
Article
Genetics & Heredity
S. Alizadeh, S. Khamse, N. Tajeddin, H. R. Khorram Khorshid, A. Delbari, M. Ohadi
Summary: This study identifies a specific genotype at a CG-rich trinucleotide short tandem repeat (STR) locus that is associated with late-onset neurocognitive disorders such as Alzheimer's disease (AD).
Article
Genetics & Heredity
Shougang Liu, Zhe Zhuang, Fanghua Liu, Xiuqing Yuan, Zeqiao Zhang, Xiaoqian Liang, Xinhui Li, Yongfeng Chen
Summary: This study investigated the effect and mechanism of RPL9 and TIFA in scalp psoriasis, and identified RPL9 as a potential therapeutic target for scalp psoriasis.
Article
Genetics & Heredity
Shiting Wang, Jiaqi Chen, Zhichao Jin, Ying Xing, Ruiping Wang
Summary: This study suggests a causal association between hair color and skin cancers, with light hair colors (red, blonde, and light brown) being associated with an increased risk and dark brown hair being associated with a decreased risk.
Article
Genetics & Heredity
Joseph Hawadak, Loick Pradel Kojom Foko, Rodrigue Roman Dongang Nana, Karmveer Yadav, Veena Pande, Aparup Das, Vineeta Singh
Summary: This study investigates the genetic diversity and natural selection of the Pfama-1 gene in Plasmodium falciparum isolates from Cameroon. The study finds a considerable nucleotide and haplotype diversity, as well as specific mutations in Cameroonian isolates. Positive diversifying selection and the identification of selected codon sites suggest the potential implication of these genetic variations in host immune pressure and parasite-binding complex modulation. The findings provide valuable baseline data for malaria vaccine design.
Article
Genetics & Heredity
Emily Biernat, Mansi Verma, Chhabi K. Govind
Summary: RSC is an essential ATP-dependent chromatin remodeling complex in Saccharomyces cerevisiae. It regulates nucleosome-depleted regions (NDRs) by sliding flanking nucleosomes away from NDRs. Depletion of RSC leads to nucleosome encroachment in NDRs and transcription initiation defects. The study compared the effects of catalytic-dead Sth1 and rapid depletion of Sth1 on transcription. Rapid depletion of Sth1 reduces recruitment of TBP and Pol II, while the catalytic-dead mutant exhibits a severe reduction in TBP binding but accumulates Pol II in coding regions. The results suggest a role for RSC in transcription elongation and termination processes.
Article
Genetics & Heredity
Yunxiao Wei, Yuhan Song, Muhammad Aamir Khan, Chengzhen Liang, Zhigang Meng, Yuan Wang, Sandui Guo, Rui Zhang
Summary: This study analyzed the GhTPP protein family in upland cotton for the first time and identified the important role of GhTPPA_2 in regulating sugar metabolism, improving soluble sugar accumulation, and drought stress tolerance.
Article
Genetics & Heredity
Yannan Geng, Rui Shao, Tiantong Xu, Lilong Zhang
Summary: A novel risk model based on SCUBE3, TNNC1, SPON1, SEPT12 and ULBP1 genes was developed for predicting PMOP risk, with higher risk score indicating higher risk of suffering from PMOP. Significant differences in signaling pathway activities were observed between the high-risk score group and the low-risk score group.
Article
Genetics & Heredity
Randy P. Williams, Corina Lesseur, Haoxiang Cheng, Qian Li, Maya Deyssenroth, Christopher D. Molteno, Ernesta M. Meintjes, Sandra W. Jacobson, Joseph L. Jacobson, Helen Wainwright, Ke Hao, Jia Chen, R. Colin Carter
Summary: The study suggests that heavy alcohol exposure during pregnancy may impact the proportion of fetal placental villi macrophages and increase the expression of inflammatory genes. Further research is needed to explore these effects and evaluate the potential functional roles of placental inflammation in FASD.
Article
Genetics & Heredity
Lvjing Luo, Lishuang Sun, Shu Li, Huiting Liu, Zhengyu Chen, Shi Huang, Yinyin Mo, Genliang Li
Summary: This study analyzed the expression of Ptpn1 and miR-124-3p in testicular tissues of mice and investigated their regulatory relationship. The results showed that Ptpn1 expression was up-regulated in adult mouse testis compared to juvenile mouse testis, while miR-124-3p expression showed an opposite pattern. Further analysis suggested that the down-regulation of miR-124-3p may contribute to the high expression of Ptpn1 in adult mouse testis.
Article
Genetics & Heredity
Gairui Li, Dan Zhao, Xiaolin Peng, Yashuang Zhao
Summary: MiRNA-22 shows potential as a candidate for early diagnosis of colorectal cancer (CRC). The study found higher miR-22 expression levels in the CRC and CRA groups, suggesting its potential as a biomarker for CRC early screening.
Article
Genetics & Heredity
Zhongqiu Zhu, Qianting Yang, Xiaoying Tian, Da Man, Jian Wang, Junfang Zhang, Bingshe Han
Summary: This study constructed a ceRNA network mediated by lncRNAs in cold-acclimated zebrafish ZF4 cells and revealed that upregulation of MSTRG3207 promotes apoptosis by sponging dre-miR-736 during cold acclimation.
Article
Genetics & Heredity
Weitao Chen, Denggao Xiang, Shang Gao, Shuli Zhu, Zhi Wu, Yuefei Li, Jie Li
Summary: Dam construction has negatively impacted the genetic diversity and structure of fish populations. This case study on the endangered Hemibagrus guttatus found low genetic diversity, high levels of inbreeding, and decreasing population size in fragmented populations. Genetic structure and differentiation were also observed, indicating the influence of dams on these fish populations.
Article
Genetics & Heredity
Pooja Singh, Debleena Guin, Bijay Pattnaik, Ritushree Kukreti
Summary: Through systematic literature review and meta-analysis, it was found that idiopathic pulmonary fibrosis is significantly associated with 222 polymorphisms in 118 genes. Four polymorphisms - rs35705950/MUC5B, rs2736100/TERT, rs2076295/DSP, and rs111521887/TOLLIP, exhibited substantial epidemiological evidence supporting their association with IPF risk.
Article
Genetics & Heredity
Jianping Zhang, Zhijun Cai, Fanzhe Feng, Yufeng Peng, Yi Cui, Yongiqing Xu
Summary: This study found that exosomes secreted by young BMSCs can promote the healing of tendon-bone interface after rotator cuff tears. These exosomes can improve extracellular matrix remodeling, osteogenic differentiation, angiogenesis, and stemness of tendon-derived stem cells (TDSCs). The exosomes from young BMSCs have better effects compared to those from aged BMSCs.
