Genome-wide comparison of allele-specific gene expression between African and European populations

Population- and individual-specific regulatory variation in Sardinia

(2017) Mauro Pala et al.   NATURE GENETICS

Natural selection in a population of Drosophila melanogaster explained by changes in gene expression caused by sequence variation in core promoter regions

(2016) Mitsuhiko P. Sato et al.   BMC EVOLUTIONARY BIOLOGY

Changes in selective pressures associated with human population expansion may explain metabolic and immune related pathways enriched for signatures of positive selection

(2016) Alexandra I. Vatsiou et al.   BMC GENOMICS

A systematic, large-scale comparison of transcription factor binding site models

(2016) Daniela Hombach et al.   BMC GENOMICS

Discovering Single Nucleotide Polymorphisms Regulating Human Gene Expression Using Allele Specific Expression from RNA-seq Data

(2016) E. Y. Kang et al.   GENETICS

Genetic diversity and natural selection footprints of the glycine amidinotransferase gene in various human populations

(2016) Asifullah Khan et al.   Scientific Reports

Alternative Splicing QTLs in European and African Populations

(2015) Halit Ongen et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Proper Use of Allele-Specific Expression Improves Statistical Power forcis-eQTL Mapping with RNA-Seq Data

(2015) Yi-Juan Hu et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Association mapping reveals the role of purifying selection in the maintenance of genomic variation in gene expression

(2015) Emily B. Josephs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential Natural Selection of Human Zinc Transporter Genes between African and Non-African Populations

(2015) Chao Zhang et al.   Scientific Reports

Ikaros mediates the DNA methylation-independent silencing of MCJ/DNAJC15 gene expression in macrophages

(2015) Nicolás Navasa et al.   Scientific Reports

Inter-population Differences in Retrogene Loss and Expression in Humans

(2015) Michał Kabza et al.   PLoS Genetics

Ancestry Dependent DNA Methylation and Influence of Maternal Nutrition

(2015) Khyobeni Mozhui et al.   PLoS One

Increased genetic diversity of ADME genes in African Americans compared with their putative ancestral source populations and implications for Pharmacogenomics

(2014) Jing Li et al.   BMC GENETICS

Allele-specific expression and eQTL analysis in mouse adipose tissue

(2014) Yehudit Hasin-Brumshtein et al.   BMC GENOMICS

Interrogation of allelic chromatin states in human cells by high-density ChIP-genotyping

(2014) Nicholas Light et al.   Epigenetics

Regulation of Oxidative Stress by Methylation-Controlled J Protein Controls Macrophage Responses to Inflammatory Insults

(2014) Nicolás Navasa et al.   JOURNAL OF INFECTIOUS DISEASES

Transcriptome Sequencing from Diverse Human Populations Reveals Differentiated Regulatory Architecture

(2014) Alicia R. Martin et al.   PLoS Genetics

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

(2013) A. Battle et al.   GENOME RESEARCH

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

(2013) Danielle Welter et al.   NUCLEIC ACIDS RESEARCH

Genome Wide Association Study (GWAS) of Chagas Cardiomyopathy in Trypanosoma cruzi Seropositive Subjects

(2013) Xutao Deng et al.   PLoS One

Integrating GWAS and Expression Data for Functional Characterization of Disease-Associated SNPs: An Application to Follicular Lymphoma

(2012) Lucia Conde et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Matrix eQTL: ultra fast eQTL analysis via large matrix operations

(2012) A. A. Shabalin   BIOINFORMATICS

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

(2012) Mathieu Gautier et al.   BIOINFORMATICS

Annotation of functional variation in personal genomes using RegulomeDB

(2012) A. P. Boyle et al.   GENOME RESEARCH

The impact of recent events on human genetic diversity

(2012) M. A. Jobling   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Patterns of Cis Regulatory Variation in Diverse Human Populations

(2012) Barbara E. Stranger et al.   PLoS Genetics

Population-specificity of human DNA methylation

(2012) Hunter B Fraser et al.   GENOME BIOLOGY

A Statistical Framework for eQTL Mapping Using RNA-seq Data

(2011) Wei Sun   BIOMETRICS

Monoallelic Expression Determines Oncogenic Progression and Outcome in Benign and Malignant Brain Tumors

(2011) E. J. Walker et al.   CANCER RESEARCH

SNP-based large-scale identification of allele-specific gene expression in human B cells

(2011) Min-Young Song et al.   GENE

Fine-scaled human genetic structure revealed by SNP microarrays

(2009) J. Xing et al.   GENOME RESEARCH

Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human

(2009) Kun Zhang et al.   NATURE METHODS

Evaluation of Genetic Variation Contributing to Differences in Gene Expression between Populations

(2008) Wei Zhang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Allele-specific gene expression patterns in primary leukemic cells reveal regulation of gene expression by CpG site methylation

(2008) L. Milani et al.   GENOME RESEARCH

Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression

(2008) David Serre et al.   PLoS Genetics