Genotype imputation performance of three reference panels using African ancestry individuals

Improved imputation accuracy of rare and low-frequency variants using population-specific high-coverage WGS-based imputation reference panel

(2017) Mario Mitt et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Genome-wide association analysis identifies novel blood pressure loci and offers biological insights into cardiovascular risk

(2017) Helen R Warren et al.   NATURE GENETICS

Analysis commons, a team approach to discovery in a big-data environment for genetic epidemiology

(2017) Jennifer A Brody et al.   NATURE GENETICS

Extending the use of GWAS data by combining data from different genetic platforms

(2017) E. P. A. van Iperen et al.   PLoS One

Applications of the 1000 Genomes Project resources

(2016) Xiangqun Zheng-Bradley et al.   Briefings in Functional Genomics

A reference panel of 64,976 haplotypes for genotype imputation

(2016)   NATURE GENETICS

Next-generation genotype imputation service and methods

(2016) Sayantan Das et al.   NATURE GENETICS

A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome

(2016) Rasika Ann Mathias et al.   Nature Communications

A combined reference panel from the 1000 Genomes and UK10K projects improved rare variant imputation in European and Chinese samples

(2016) Wen-Chi Chou et al.   Scientific Reports

Comparing performance of modern genotype imputation methods in different ethnicities

(2016) Nab Raj Roshyara et al.   Scientific Reports

Impact of genetic similarity on imputation accuracy

(2015) Nab Raj Roshyara et al.   BMC GENETICS

An integrated map of structural variation in 2,504 human genomes

(2015) Peter H. Sudmant et al.   NATURE

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

The UK10K project identifies rare variants in health and disease

(2015)   NATURE

Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel

(2015) Jie Huang et al.   Nature Communications

When Does Choice of Accuracy Measure Alter Imputation Accuracy Assessments?

(2015) Shelina Ramnarine et al.   PLoS One

Efficient haplotype matching and storage using the positional Burrows-Wheeler transform (PBWT)

(2014) R. Durbin   BIOINFORMATICS

minimac2: faster genotype imputation

(2014) Christian Fuchsberger et al.   BIOINFORMATICS

Rare variant genotype imputation with thousands of study-specific whole-genome sequences: implications for cost-effective study designs

(2014) Giorgio Pistis et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Improved imputation quality of low-frequency and rare variants in European samples using the ‘Genome of The Netherlands’

(2014) Patrick Deelen et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Admixture analysis of spontaneous hepatitis C virus clearance in individuals of African descent

(2014) G L Wojcik et al.   GENES AND IMMUNITY

Admixture Mapping Identifies a Quantitative Trait Locus Associated with FEV1/FVC in the COPDGene Study

(2014) Margaret M. Parker et al.   GENETIC EPIDEMIOLOGY

The African Genome Variation Project shapes medical genetics in Africa

(2014) Deepti Gurdasani et al.   NATURE

Whole-genome sequence variation, population structure and demographic history of the Dutch population

(2014) Laurent C Francioli et al.   NATURE GENETICS

Imputation and quality control steps for combining multiple genome-wide datasets

(2014) Shefali S. Verma et al.   Frontiers in Genetics

Imputation of coding variants in African Americans: better performance using data from the exome sequencing project

(2013) Qing Duan et al.   BIOINFORMATICS

Imputation across genotyping arrays for genome-wide association studies: assessment of bias and a correction strategy

(2013) Eric O. Johnson et al.   HUMAN GENETICS

Practical consideration of genotype imputation: Sample size, window size, reference choice, and untyped rate

(2013) Guimin Gao et al.   Statistics and Its Interface

Imputation-Based Genomic Coverage Assessments of Current Human Genotyping Arrays

(2013) Sarah C. Nelson et al.   G3-Genes Genomes Genetics

Fast and accurate inference of local ancestry in Latino populations

(2012) Yael Baran et al.   BIOINFORMATICS

Evaluation of the imputation performance of the program IMPUTE in an admixed sample from Mexico City using several model designs

(2012) S Krithika et al.   BMC Medical Genomics

Genotype Imputation for African Americans Using Data From HapMap Phase II Versus 1000 Genomes Projects

(2012) Yun J. Sung et al.   GENETIC EPIDEMIOLOGY

Comprehensive evaluation of imputation performance in African Americans

(2012) Pritam Chanda et al.   JOURNAL OF HUMAN GENETICS

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

(2012) Bryan Howie et al.   NATURE GENETICS

Assessment of Genotype Imputation Performance Using 1000 Genomes in African American Studies

(2012) Dana B. Hancock et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Design and coverage of high throughput genotyping arrays optimized for individuals of East Asian, African American, and Latino race/ethnicity using imputation and a novel hybrid SNP selection algorithm

(2011) Thomas J. Hoffmann et al.   GENOMICS

A genome-wide association study of COPD identifies a susceptibility locus on chromosome 19q13

(2011) M. H. Cho et al.   HUMAN MOLECULAR GENETICS

The Relation of HLA Genotype to Hepatitis C Viral Load and Markers of Liver Fibrosis in HIV-Infected and HIV-Uninfected Women

(2011) Mark H. Kuniholm et al.   JOURNAL OF INFECTIOUS DISEASES

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Genetic Epidemiology of COPD (COPDGene) Study Design

(2010) Elizabeth A. Regan et al.   COPD-Journal of Chronic Obstructive Pulmonary Disease

Spontaneous Control of HCV Is Associated With Expression of HLA-B*57 and Preservation of Targeted Epitopes

(2010) Arthur Y. Kim et al.   GASTROENTEROLOGY

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

(2010) Yun Li et al.   GENETIC EPIDEMIOLOGY

Integrating common and rare genetic variation in diverse human populations

(2010)   NATURE

Genotype imputation for genome-wide association studies

(2010) Jonathan Marchini et al.   NATURE REVIEWS GENETICS

A New Statistic to Evaluate Imputation Reliability

(2010) Peng Lin et al.   PLoS One

A case-control study of factors associated with resolution of hepatitis C viremia in former blood donors (CME)

(2010) Leslie H. Tobler et al.   TRANSFUSION

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genotype-Imputation Accuracy across Worldwide Human Populations

(2009) Lucy Huang et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

More Rare Birds, and the Occasional Swan

(2009) Brian R. Edlin et al.   GASTROENTEROLOGY

Practical considerations for imputation of untyped markers in admixed populations

(2009) Daniel Shriner et al.   GENETIC EPIDEMIOLOGY

A Genome-Wide Association Study of Hypertension and Blood Pressure in African Americans

(2009) Adebowale Adeyemo et al.   PLoS Genetics

Evaluating the Effects of Imputation on the Power, Coverage, and Cost Efficiency of Genome-wide SNP Platforms

(2008) Carl A. Anderson et al.   AMERICAN JOURNAL OF HUMAN GENETICS

African Genetic Diversity: Implications for Human Demographic History, Modern Human Origins, and Complex Disease Mapping

(2008) Michael C. Campbell et al.   Annual Review of Genomics and Human Genetics

Imputation of missing genotypes: an empirical evaluation of IMPUTE

(2008) Zhenming Zhao et al.   BMC GENETICS

A comprehensive evaluation of SNP genotype imputation

(2008) Michael Nothnagel et al.   HUMAN GENETICS