Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
出版年份 2018 全文链接
标题
Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
作者
关键词
-
出版物
GENOME RESEARCH
Volume 28, Issue 7, Pages 1029-1038
出版商
Cold Spring Harbor Laboratory
发表日期
2018-06-09
DOI
10.1101/gr.233460.117
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Repeat associated mechanisms of genome evolution and function revealed by theMus caroliandMus paharigenomes
- (2018) David Thybert et al. GENOME RESEARCH
- Nanopore sequencing and assembly of a human genome with ultra-long reads
- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
- High-resolution comparative analysis of great ape genomes
- (2018) Zev N. Kronenberg et al. SCIENCE
- Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
- (2017) Valerie A. Schneider et al. GENOME RESEARCH
- Direct determination of diploid genome sequences
- (2017) Neil I. Weisenfeld et al. GENOME RESEARCH
- Toil enables reproducible, open source, big biomedical data analyses
- (2017) John Vivian et al. NATURE BIOTECHNOLOGY
- Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells
- (2017) Ashley Byrne et al. Nature Communications
- Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes
- (2017) Panayotis Vlastaridis et al. GigaScience
- Simultaneous gene finding in multiple genomes
- (2016) Stefanie König et al. BIOINFORMATICS
- Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
- (2016) Nicholas H. Putnam et al. GENOME RESEARCH
- Discovery and genotyping of structural variation from long-read haploid genome sequence data
- (2016) John Huddleston et al. GENOME RESEARCH
- Identification of distinct genes associated with seawater aspiration-induced acute lung injury by gene expression profile analysis
- (2016) Wei Liu et al. Molecular Medicine Reports
- Near-optimal probabilistic RNA-seq quantification
- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- The ExAC browser: displaying reference data information from over 60 000 exomes
- (2016) Konrad J. Karczewski et al. NUCLEIC ACIDS RESEARCH
- Long-read sequence assembly of the gorilla genome
- (2016) D. Gordon et al. SCIENCE
- The Ensembl gene annotation system
- (2016) Bronwen L. Aken et al. Database-The Journal of Biological Databases and Curation
- Gene expression defines natural changes in mammalian lifespan
- (2015) Alexey A. Fushan et al. AGING CELL
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Assembly and diploid architecture of an individual human genome via single-molecule technologies
- (2015) Matthew Pendleton et al. NATURE METHODS
- Genetic variation and the de novo assembly of human genomes
- (2015) Mark J. P. Chaisson et al. NATURE REVIEWS GENETICS
- Current methods for automated annotation of protein-coding genes
- (2015) KJ Hoff et al. Current Opinion in Insect Science
- Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
- (2015) Sean P. Gordon et al. PLoS One
- Comparative assembly hubs: Web-accessible browsers for comparative genomics
- (2014) Ngan Nguyen et al. BIOINFORMATICS
- Single haplotype assembly of the human genome from a hydatidiform mole
- (2014) Karyn Meltz Steinberg et al. GENOME RESEARCH
- Alignathon: a competitive assessment of whole-genome alignment methods
- (2014) Dent Earl et al. GENOME RESEARCH
- Origins and functional evolution of Y chromosomes across mammals
- (2014) Diego Cortez et al. NATURE
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Whole-genome analyses resolve early branches in the tree of life of modern birds
- (2014) E. D. Jarvis et al. SCIENCE
- HAL: a hierarchical format for storing and analyzing multiple genome alignments
- (2013) Glenn Hickey et al. BIOINFORMATICS
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
- (2011) M. F. Lin et al. BIOINFORMATICS
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- Cactus: Algorithms for genome multiple sequence alignment
- (2011) B. Paten et al. GENOME RESEARCH
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species
- (2009) JOURNAL OF HEREDITY
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding
- (2008) Mario Stanke et al. BIOINFORMATICS
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