Genome-wide determinants of sequence-specific DNA binding of general regulatory factors
出版年份 2018 全文链接
标题
Genome-wide determinants of sequence-specific DNA binding of general regulatory factors
作者
关键词
-
出版物
GENOME RESEARCH
Volume 28, Issue 4, Pages 497-508
出版商
Cold Spring Harbor Laboratory
发表日期
2018-03-22
DOI
10.1101/gr.229518.117
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Systematic Investigation of Transcription Factor Activity in the Context of Chromatin Using Massively Parallel Binding and Expression Assays
- (2017) Michal Levo et al. MOLECULAR CELL
- Transcription factor family‐specific DNA shape readout revealed by quantitative specificity models
- (2017) Lin Yang et al. Molecular Systems Biology
- Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding
- (2017) Jinsen Li et al. NUCLEIC ACIDS RESEARCH
- Correspondence: DNA shape is insufficient to explain binding
- (2017) Matthew J. Rossi et al. Nature Communications
- Functional architecture of the Reb1-Ter complex ofSchizosaccharomyces pombe
- (2016) Rahul Jaiswal et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo
- (2016) Anthony Mathelier et al. Cell Systems
- Deconvolving the Recognition of DNA Shape from Sequence
- (2015) Namiko Abe et al. CELL
- Quantitative modeling of transcription factor binding specificities using DNA shape
- (2015) Tianyin Zhou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo
- (2015) Gabriel E. Zentner et al. Nature Communications
- A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data
- (2014) Yaron Orenstein et al. NUCLEIC ACIDS RESEARCH
- Absence of a simple code: how transcription factors read the genome
- (2014) Matthew Slattery et al. TRENDS IN BIOCHEMICAL SCIENCES
- Effect of Rap1 binding on DNA distortion and potassium permanganate hypersensitivity
- (2013) Yann-Vaï Le Bihan et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Mapping Yeast Transcriptional Networks
- (2013) T. R. Hughes et al. GENETICS
- High-resolution mapping of transcription factor binding sites on native chromatin
- (2013) Sivakanthan Kasinathan et al. NATURE METHODS
- DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale
- (2013) Tianyin Zhou et al. NUCLEIC ACIDS RESEARCH
- A general approach for discriminative de novo motif discovery from high-throughput data
- (2013) Jan Grau et al. NUCLEIC ACIDS RESEARCH
- TFBSshape: a motif database for DNA shape features of transcription factor binding sites
- (2013) Lin Yang et al. NUCLEIC ACIDS RESEARCH
- Genomic Regions Flanking E-Box Binding Sites Influence DNA Binding Specificity of bHLH Transcription Factors through DNA Shape
- (2013) Raluca Gordân et al. Cell Reports
- Mechanisms by which transcription factors gain access to target sequence elements in chromatin
- (2012) Michael J Guertin et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Accurate Prediction of Inducible Transcription Factor Binding Intensities In Vivo
- (2012) Michael J. Guertin et al. PLoS Genetics
- Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
- (2011) Ho Sung Rhee et al. CELL
- Integrated Approaches Reveal Determinants of Genome-wide Binding and Function of the Transcription Factor Pho4
- (2011) Xu Zhou et al. MOLECULAR CELL
- Multiple Sequence-Specific Factors Generate the Nucleosome-Depleted Region on CLN2 Promoter
- (2011) Lu Bai et al. MOLECULAR CELL
- Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights
- (2011) Raluca Gordân et al. GENOME BIOLOGY
- Structural Characterization of Formaldehyde-Induced Cross-Links Between Amino Acids and Deoxynucleosides and Their Oligomers
- (2010) Kun Lu et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast
- (2010) Mythily Ganapathi et al. NUCLEIC ACIDS RESEARCH
- Mechanisms that Specify Promoter Nucleosome Location and Identity
- (2009) Paul D. Hartley et al. CELL
- The role of DNA shape in protein–DNA recognition
- (2009) Remo Rohs et al. NATURE
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- GeneTrack--a genomic data processing and visualization framework
- (2008) I. Albert et al. BIOINFORMATICS
- A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters
- (2008) Gwenael Badis et al. MOLECULAR CELL
- The DNA-encoded nucleosome organization of a eukaryotic genome
- (2008) Noam Kaplan et al. NATURE
- A large genome center's improvements to the Illumina sequencing system
- (2008) Michael A Quail et al. NATURE METHODS
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