Phylogenetic ANOVA: Group-clade aggregation, biological challenges, and a refined permutation procedure

Rethinking phylogenetic comparative methods

(2018) Josef C Uyeda et al.   SYSTEMATIC BIOLOGY

Phylogenetic convergence and multiple shell shape optima for gliding scallops (Bivalvia: Pectinidae)

(2017) J. M. Serb et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evidence for complex life cycle constraints on salamander body form diversification

(2017) Ronald M. Bonett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multivariate Phylogenetic Comparative Methods: Evaluations, Comparisons, and Recommendations

(2017) Dean C. Adams et al.   SYSTEMATIC BIOLOGY

Improving phylogenetic regression under complex evolutionary models

(2016) Florent Mazel et al.   ECOLOGY

Ecological specialization and morphological diversification in Greater Antillean boas

(2016) R. Graham Reynolds et al.   EVOLUTION

Trends in the sand: Directional evolution in the shell shape of recessing scallops (Bivalvia: Pectinidae)

(2016) Emma Sherratt et al.   EVOLUTION

Ecomorphological convergence in planktivorous surgeonfishes

(2016) S. T. Friedman et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Continental cichlid radiations: functional diversity reveals the role of changing ecological opportunity in the Neotropics

(2016) Jessica Hilary Arbour et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Likelihood-Based Parameter Estimation for High-Dimensional Phylogenetic Comparative Models: Overcoming the Limitations of “Distance-Based” Methods

(2016) Eric W. Goolsby   SYSTEMATIC BIOLOGY

Relationships of diversity, disparity, and their evolutionary rates in squirrels (Sciuridae)

(2015) Miriam L. Zelditch et al.   EVOLUTION

Permutation tests for phylogenetic comparative analyses of high-dimensional shape data: What you shuffle matters

(2015) Dean C. Adams et al.   EVOLUTION

Adaptive evolution toward larger size in mammals

(2015) Joanna Baker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Testing Convergence Versus History: Convergence Dominates Phenotypic Evolution for over 150 Million Years in Frogs

(2015) Daniel S. Moen et al.   SYSTEMATIC BIOLOGY

Comparative Analysis of Principal Components Can be Misleading

(2015) Josef C. Uyeda et al.   SYSTEMATIC BIOLOGY

Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation

(2015) Daniel L. Rabosky et al.   SYSTEMATIC BIOLOGY

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

(2014) Matthew W. Pennell et al.   BIOINFORMATICS

A METHOD FOR ASSESSING PHYLOGENETIC LEAST SQUARES MODELS FOR SHAPE AND OTHER HIGH-DIMENSIONAL MULTIVARIATE DATA

(2014) Dean C. Adams   EVOLUTION

A method for analysis of phenotypic change for phenotypes described by high-dimensional data

(2014) M L Collyer et al.   HEREDITY

Assessing Trait Covariation and Morphological Integration on Phylogenies Using Evolutionary Covariance Matrices

(2014) Dean C. Adams et al.   PLoS One

The Unsolved Challenge to Phylogenetic Correlation Tests for Categorical Characters

(2014) Wayne P. Maddison et al.   SYSTEMATIC BIOLOGY

A Generalized K Statistic for Estimating Phylogenetic Signal from Shape and Other High-Dimensional Multivariate Data

(2014) Dean C. Adams   SYSTEMATIC BIOLOGY

To converge or not to converge in environmental space: testing for similar environments between analogous succulent plants of North America and Africa

(2013) Leonardo O. Alvarado-Cárdenas et al.   ANNALS OF BOTANY

An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology

(2013) Matthew W. Pennell et al.   Annals of the New York Academy of Sciences

Evolutionary Covariation in Geometric Morphometric Data: Analyzing Integration, Modularity, and Allometry in a Phylogenetic Context

(2013) Christian Peter Klingenberg et al.   SYSTEMATIC BIOLOGY

Quantifying and Comparing Phylogenetic Evolutionary Rates for Shape and Other High-Dimensional Phenotypic Data

(2013) Dean C. Adams   SYSTEMATIC BIOLOGY

MODELING STABILIZING SELECTION: EXPANDING THE ORNSTEIN-UHLENBECK MODEL OF ADAPTIVE EVOLUTION

(2012) Jeremy M. Beaulieu et al.   EVOLUTION

Ecological radiation with limited morphological diversification in salamanders

(2012) T. BLANKERS et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

A phylogenetic comparative method for studying multivariate adaptation

(2012) Krzysztof Bartoszek et al.   JOURNAL OF THEORETICAL BIOLOGY

Independent Contrasts and PGLS Regression Estimators Are Equivalent

(2012) Simon P. Blomberg et al.   SYSTEMATIC BIOLOGY

Comparing Evolutionary Rates for Different Phenotypic Traits on a Phylogeny Using Likelihood

(2012) Dean C. Adams   SYSTEMATIC BIOLOGY

Comparative Methods as a Statistical Fix: The Dangers of Ignoring an Evolutionary Model

(2011) Rob P. Freckleton et al.   AMERICAN NATURALIST

The evolution of large-scale body size clines in Plethodon salamanders: evidence of heat-balance or species-specific artifact?

(2011) Dean C. Adams et al.   ECOGRAPHY

Why the Phylogenetic Regression Appears Robust to Tree Misspecification

(2011) Eric A. Stone   SYSTEMATIC BIOLOGY

Parallel evolution of character displacement driven by competitive selection in terrestrial salamanders

(2010) Dean C Adams   BMC EVOLUTIONARY BIOLOGY

Testing and Quantifying Phylogenetic Signals and Homoplasy in Morphometric Data

(2010) Christian Peter Klingenberg et al.   SYSTEMATIC BIOLOGY

Phylogenetic signal and linear regression on species data

(2010) Liam J. Revell   Methods in Ecology and Evolution