Enhancer identification and activity evaluation in the red flour beetle,Tribolium castaneum

Hormone-dependent control of developmental timing through regulation of chromatin accessibility

(2017) Christopher M. Uyehara et al.   GENES & DEVELOPMENT

Speed regulation of genetic cascades allows for evolvability in the body plan specification of insects

(2017) Xin Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromatin profiling ofDrosophilaCNS subpopulations identifies active transcriptional enhancers

(2016) Joseph C. Pearson et al.   DEVELOPMENT

The iBeetle large-scale RNAi screen reveals gene functions for insect development and physiology

(2015) Christian Schmitt-Engel et al.   Nature Communications

Evidence for Deep Regulatory Similarities in Early Developmental Programs across Highly Diverged Insects

(2014) Majid Kazemian et al.   Genome Biology and Evolution

Enhancer–core-promoter specificity separates developmental and housekeeping gene regulation

(2014) Muhammad A. Zabidi et al.   NATURE

Genome-scale functional characterization of Drosophila developmental enhancers in vivo

(2014) Evgeny Z. Kvon et al.   NATURE

Transcriptional enhancers: from properties to genome-wide predictions

(2014) Daria Shlyueva et al.   NATURE REVIEWS GENETICS

Identifying transcriptional cis -regulatory modules in animal genomes

(2014) Kushal Suryamohan et al.   Wiley Interdisciplinary Reviews-Developmental Biology

A Common Set of DNA Regulatory Elements Shapes Drosophila Appendages

(2013) Daniel J. McKay et al.   DEVELOPMENTAL CELL

Insights into insect wing origin provided by functional analysis of vestigial in the red flour beetle, Tribolium castaneum

(2013) C. M. Clark-Hachtel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA

(2012) Jeremy M Simon et al.   Nature Protocols

A Survey of 6,300 Genomic Fragments for cis-Regulatory Activity in the Imaginal Discs of Drosophila melanogaster

(2012) Aurélie Jory et al.   Cell Reports

A GAL4-Driver Line Resource for Drosophila Neurobiology

(2012) Arnim Jenett et al.   Cell Reports

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

(2011) L. Song et al.   GENOME RESEARCH

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison

(2011) Majid Kazemian et al.   NUCLEIC ACIDS RESEARCH

Comparisons of the embryonic development of Drosophila , Nasonia , and Tribolium

(2011) Jeremy A. Lynch et al.   Wiley Interdisciplinary Reviews-Developmental Biology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Functionality of the GAL4/UAS system in Tribolium requires the use of endogenous core promoters

(2010) Johannes B Schinko et al.   BMC DEVELOPMENTAL BIOLOGY

Beyond Drosophila: RNAi In Vivo and Functional Genomics in Insects

(2009) Xavier Bellés   Annual Review of Entomology

Repeated Co-options of Exoskeleton Formation during Wing-to-Elytron Evolution in Beetles

(2009) Yoshinori Tomoyasu et al.   CURRENT BIOLOGY

Motif-Blind, Genome-Wide Discovery of cis-Regulatory Modules in Drosophila and Mouse

(2009) Miriam R. Kantorovitz et al.   DEVELOPMENTAL CELL

Conservation of enhancer location in divergent insects

(2009) J. Cande et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Wings, Horns, and Butterfly Eyespots: How Do Complex Traits Evolve?

(2009) Antónia Monteiro et al.   PLOS BIOLOGY

Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution

(2008) Sean B. Carroll   CELL

Delimiting the conserved features of hunchback function for the trunk organization of insects

(2008) H. Marques-Souza et al.   DEVELOPMENT

Establishment of Tribolium as a Genetic Model System and Its Early Contributions to Evo-Devo

(2008) R. Denell   GENETICS

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

The evolution of developmental gene networks: lessons from comparative studies on holometabolous insects

(2008) A. D Peel   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Tools for neuroanatomy and neurogenetics in Drosophila

(2008) B. D. Pfeiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shadow Enhancers as a Source of Evolutionary Novelty

(2008) J.-W. Hong et al.   SCIENCE