4.2 Article

Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium

期刊

BRAZILIAN JOURNAL OF MICROBIOLOGY
卷 49, 期 2, 页码 210-211

出版社

SOC BRASILEIRA MICROBIOLOGIA
DOI: 10.1016/j.bjm.2017.07.005

关键词

Diazotrophic; Next generation sequencing; Nitrogen-fixing; Secretion system

资金

  1. CNPq/INCT-FBN [573828/2008-3]
  2. CNPq-Universal [476254/2013-2]
  3. FAPERJ-CNE [E26/102.312/2013]
  4. Embrapa [02.13.08.006.00.03.001]
  5. CAPES/EMBRAPA [309170/2013-3]
  6. CNPq [304750/2013]

向作者/读者索取更多资源

Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association. (C) 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda.

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