Success: evolutionary and structural properties of amino acids prove effective for succinylation site prediction

Proline dehydrogenase promotes senescence through the generation of reactive oxygen species

(2017) Taiki Nagano et al.   JOURNAL OF CELL SCIENCE

PSSM-Suc: Accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction

(2017) Abdollah Dehzangi et al.   JOURNAL OF THEORETICAL BIOLOGY

Beneficial effects of Galectin-9 on allergen-specific sublingual immunotherapy in a Dermatophagoides farinae -induced mouse model of chronic asthma

(2017) Masaki Ikeda et al.   ALLERGOLOGY INTERNATIONAL

iSuc-PseOpt: Identifying lysine succinylation sites in proteins by incorporating sequence-coupling effects into pseudo components and optimizing imbalanced training dataset

(2016) Jianhua Jia et al.   ANALYTICAL BIOCHEMISTRY

3D structure determination of a protein in living cells using paramagnetic NMR spectroscopy

(2016) Bin-Bin Pan et al.   CHEMICAL COMMUNICATIONS

Sequence-Based Prediction of Protein–Carbohydrate Binding Sites Using Support Vector Machines

(2016) Ghazaleh Taherzadeh et al.   Journal of Chemical Information and Modeling

Sequence-based prediction of protein-peptide binding sites using support vector machine

(2016) Ghazaleh Taherzadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach

(2016) Jianhua Jia et al.   JOURNAL OF THEORETICAL BIOLOGY

Protein fold recognition using HMM–HMM alignment and dynamic programming

(2016) James Lyons et al.   JOURNAL OF THEORETICAL BIOLOGY

SuccinSite: a computational tool for the prediction of protein succinylation sites by exploiting the amino acid patterns and properties

(2016) Md. Mehedi Hasan et al.   Molecular BioSystems

Transketolase counteracts oxidative stress to drive cancer development

(2016) Iris Ming-Jing Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

First Comprehensive Proteome Analyses of Lysine Acetylation and Succinylation in Seedling Leaves of Brachypodium distachyon L.

(2016) Shoumin Zhen et al.   Scientific Reports

iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition

(2015) Zi Liu et al.   ANALYTICAL BIOCHEMISTRY

iRNA-Methyl: Identifying N6-methyladenosine sites using pseudo nucleotide composition

(2015) Wei Chen et al.   ANALYTICAL BIOCHEMISTRY

Oxygen reactivity of mammalian sulfite oxidase provides a concept for the treatment of sulfite oxidase deficiency

(2015) Abdel A. Belaidi et al.   BIOCHEMICAL JOURNAL

Highly accurate sequence-based prediction of half-sphere exposures of amino acid residues in proteins

(2015) Rhys Heffernan et al.   BIOINFORMATICS

Gram-positive and gram-negative subcellular localization using rotation forest and physicochemical-based features

(2015) Abdollah Dehzangi et al.   BMC BIOINFORMATICS

Recent Progress in Predicting Posttranslational Modification Sites in Proteins

(2015) Yan Xu et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Advancing the Accuracy of Protein Fold Recognition by Utilizing Profiles From Hidden Markov Models

(2015) James Lyons et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Enhanced Protein Fold Prediction Method Through a Novel Feature Extraction Technique

(2015) Leyi Wei et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

Predict Gram-Positive and Gram-Negative Subcellular Localization via Incorporating Evolutionary Information and Physicochemical Features Into Chou's General PseAAC

(2015) Ronesh Sharma et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via benchmark dataset optimization approach

(2015) Xuan Xiao et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Identification of microRNA precursor with the degenerate K-tuple or Kmer strategy

(2015) Bin Liu et al.   JOURNAL OF THEORETICAL BIOLOGY

Accurate in silico identification of protein succinylation sites using an iterative semi-supervised learning technique

(2015) Xiaowei Zhao et al.   JOURNAL OF THEORETICAL BIOLOGY

Gram-positive and Gram-negative protein subcellular localization by incorporating evolutionary-based descriptors into Chou׳s general PseAAC

(2015) Abdollah Dehzangi et al.   JOURNAL OF THEORETICAL BIOLOGY

Improving prediction of secondary structure, local backbone angles and solvent accessible surface area of proteins by iterative deep learning

(2015) Rhys Heffernan et al.   Scientific Reports

iSuc-PseAAC: predicting lysine succinylation in proteins by incorporating peptide position-specific propensity

(2015) Yan Xu et al.   Scientific Reports

Elongation Factor 1A-1 Is a Mediator of Hepatocyte Lipotoxicity Partly through Its Canonical Function in Protein Synthesis

(2015) Alexandra M. Stoianov et al.   PLoS One

LON is the master protease that protects against protein aggregation in human mitochondria through direct degradation of misfolded proteins

(2015) Ayenachew Bezawork-Geleta et al.   Scientific Reports

Protein fold recognition using geometric kernel data fusion

(2014) Pooya Zakeri et al.   BIOINFORMATICS

Proposing a highly accurate protein structural class predictor using segmentation-based features

(2014) Abdollah Dehzangi et al.   BMC GENOMICS

KIFC3 promotes mitotic progression and integrity of the central spindle in cytokinesis

(2014) Jeannette Nachbar et al.   CELL CYCLE

A Tri-Gram Based Feature Extraction Technique Using Linear Probabilities of Position Specific Scoring Matrix for Protein Fold Recognition

(2014) Kuldip K. Paliwal et al.   IEEE TRANSACTIONS ON NANOBIOSCIENCE

iUbiq-Lys: prediction of lysine ubiquitination sites in proteins by extracting sequence evolution information via a gray system model

(2014) Wang-Ren Qiu et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto-encoder deep neural network

(2014) James Lyons et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Prediction of protein structure classes using hybrid space of multi-profile Bayes and bi-gram probability feature spaces

(2014) Maqsood Hayat et al.   JOURNAL OF THEORETICAL BIOLOGY

Prediction of protein structure classes by incorporating different protein descriptors into general Chou’s pseudo amino acid composition

(2014) Loris Nanni et al.   JOURNAL OF THEORETICAL BIOLOGY

Protein fold recognition by alignment of amino acid residues using kernelized dynamic time warping

(2014) James Lyons et al.   JOURNAL OF THEORETICAL BIOLOGY

LAceP: Lysine Acetylation Site Prediction Using Logistic Regression Classifiers

(2014) Ting Hou et al.   PLoS One

DNA Binding by the Ribosomal DNA Transcription Factor Rrn3 Is Essential for Ribosomal DNA Transcription

(2013) Ann Stepanchick et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Predicting anticancer peptides with Chou′s pseudo amino acid composition and investigating their mutagenicity via Ames test

(2013) Zohre Hajisharifi et al.   JOURNAL OF THEORETICAL BIOLOGY

SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways

(2013) Jeongsoon Park et al.   MOLECULAR CELL

CPLM: a database of protein lysine modifications

(2013) Zexian Liu et al.   NUCLEIC ACIDS RESEARCH

Lysine Succinylation Is a Frequently Occurring Modification in Prokaryotes and Eukaryotes and Extensively Overlaps with Acetylation

(2013) Brian T. Weinert et al.   Cell Reports

Cloning, characterization and sub-cellular localization of gamma subunit of T-complex protein-1 (chaperonin) from Leishmania donovani

(2012) Bhaskar et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Deletion of glutamate dehydrogenase 1 (Glud1) in the central nervous system affects glutamate handling without altering synaptic transmission

(2012) Francesca Frigerio et al.   JOURNAL OF NEUROCHEMISTRY

A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition

(2012) Alok Sharma et al.   JOURNAL OF THEORETICAL BIOLOGY

Lysine Succinylation and Lysine Malonylation in Histones

(2012) Zhongyu Xie et al.   MOLECULAR & CELLULAR PROTEOMICS

SPINE X: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

(2011) Eshel Faraggi et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

The severity of phenotype linked to SUCLG1 mutations could be correlated with residual amount of SUCLG1 protein

(2010) C. Rouzier et al.   JOURNAL OF MEDICAL GENETICS

Identification of lysine succinylation as a new post-translational modification

(2010) Zhihong Zhang et al.   Nature Chemical Biology

CPLA 1.0: an integrated database of protein lysine acetylation

(2010) Zexian Liu et al.   NUCLEIC ACIDS RESEARCH

FKBP25, a novel regulator of the p53 pathway, induces the degradation of MDM2 and activation of p53

(2009) Anna Maria Ochocka et al.   FEBS LETTERS

Predicting Continuous Local Structure and the Effect of Its Substitution for Secondary Structure in Fragment-Free Protein Structure Prediction

(2009) Eshel Faraggi et al.   STRUCTURE

Exploratory Undersampling for Class-Imbalance Learning

(2008) Xu-Ying Liu et al.   IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS PART B-CYBERNETICS

Cytoplasmic Serine Hydroxymethyltransferase Regulates the Metabolic Partitioning of Methylenetetrahydrofolate but Is Not Essential in Mice

(2008) Amanda J. MacFarlane et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms

(2008) Kuo-Chen Chou et al.   Nature Protocols

Real-value prediction of backbone torsion angles

(2008) Bin Xue et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS