Small RNA-based prediction of hybrid performance in maize

Parental Expression Variation of Small RNAs Is Negatively Correlated with Grain Yield Heterosis in a Maize Breeding Population

(2018) Felix Seifert et al.   Frontiers in Plant Science

Parental DNA Methylation States Are Associated with Heterosis in Epigenetic Hybrids

(2017) Kathrin Lauss et al.   PLANT PHYSIOLOGY

Omics-based hybrid prediction in maize

(2017) Matthias Westhues et al.   THEORETICAL AND APPLIED GENETICS

Metabolomic prediction of yield in hybrid rice

(2016) Shizhong Xu et al.   PLANT JOURNAL

Haploids: Constraints and opportunities in plant breeding

(2015) Sangam L. Dwivedi et al.   BIOTECHNOLOGY ADVANCES

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development

(2015) Yu Hasegawa et al.   PLoS Genetics

Genome-wide meta-analysis of maize heterosis reveals the potential role of additive gene expression at pericentromeric loci

(2014) Alexander Thiemann et al.   BMC PLANT BIOLOGY

What is crop heterosis: new insights into an old topic

(2014) Donghui Fu et al.   JOURNAL OF APPLIED GENETICS

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genome-wide identification of genes regulated intransby transposable element small interfering RNAs

(2013) Andrea D McCue et al.   RNA Biology

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

(2012) Christian Riedelsheimer et al.   NATURE GENETICS

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids

(2012) H. Shen et al.   PLANT CELL

Trans Chromosomal Methylation in Arabidopsis hybrids

(2012) I. K. Greaves et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Repeat associated small RNAs vary among parents and following hybridization in maize

(2012) W. T. Barber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic diversity analysis of elite European maize (Zea mays L.) inbred lines using AFLP, SSR, and SNP markers reveals ascertainment bias for a subset of SNPs

(2012) Elisabetta Frascaroli et al.   THEORETICAL AND APPLIED GENETICS

The origin and effect of small RNA signaling in plants

(2012) Jean-Sébastien Parent et al.   Frontiers in Plant Science

A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome

(2011) Martin W. Ganal et al.   PLoS One

Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor

(2011) M. Groszmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Partial least squares regression, support vector machine regression, and transcriptome-based distances for prediction of maize hybrid performance with gene expression data

(2011) Junjie Fu et al.   THEORETICAL AND APPLIED GENETICS

An association transcriptomics approach to the prediction of hybrid performance

(2010) David Stokes et al.   MOLECULAR BREEDING

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids

(2010) G. He et al.   PLANT CELL

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield

(2009) M. Hauben et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

(2008) K. Nobuta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular marker-based prediction of hybrid performance in maize using unbalanced data from multiple experiments with factorial crosses

(2008) Tobias A. Schrag et al.   THEORETICAL AND APPLIED GENETICS