Molecular dynamics simulations revealed structural differences among WRKY domain-DNA interaction in barley (Hordeum vulgare)

Dynamics of fluoroquinolones induced resistance in DNA gyrase of Mycobacterium tuberculosis

(2017) Bharati Pandey et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Double Mutants in DNA Gyrase Lead to Ofloxacin Resistance in Mycobacterium tuberculosis

(2017) Bharati Pandey et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Molecular principles behind pyrazinamide resistance due to mutations in panD gene in Mycobacterium tuberculosis

(2016) Bharati Pandey et al.   GENE

WRKY Transcription Factors: Molecular Regulation and Stress Responses in Plants

(2016) Ujjal J. Phukan et al.   Frontiers in Plant Science

Novel Genomic and Evolutionary Insight of WRKY Transcription Factors in Plant Lineage

(2016) Tapan Kumar Mohanta et al.   Scientific Reports

Structural investigations of T854A mutation in EGFR and identification of novel inhibitors using structure activity relationships

(2015) Sukriti Goyal et al.   BMC GENOMICS

Structural modeling and molecular simulation analysis of HvAP2/EREBP from barley

(2015) Bharati Pandey et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Identifying key interactions stabilizing DOF zinc finger–DNA complexes using in silico approaches

(2015) Maryam Hamzeh-Mivehroud et al.   JOURNAL OF THEORETICAL BIOLOGY

Transcription factor WRKY46 modulates the development of Arabidopsis lateral roots in osmotic/salt stress conditions via regulation of ABA signaling and auxin homeostasis

(2015) Zhong Jie Ding et al.   PLANT JOURNAL

WRKY71 accelerates flowering via the direct activation ofFLOWERING LOCUS TandLEAFYinArabidopsis thaliana

(2015) Yanchong Yu et al.   PLANT JOURNAL

Evaluation of conformational changes in diabetes-associated mutation in insulin a chain: A molecular dynamics study

(2015) Yong Hwan Kim et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress

(2014) Sezer Okay et al.   MOLECULAR GENETICS AND GENOMICS

bZIPs and WRKYs: two large transcription factor families executing two different functional strategies

(2014) Carles M. Llorca et al.   Frontiers in Plant Science

Elucidating the evolutionary conserved DNA-binding specificities of WRKY transcription factors by molecular dynamics and in vitro binding assays

(2013) Luise H. Brand et al.   NUCLEIC ACIDS RESEARCH

Evolution of wild cereals during 28 years of global warming in Israel

(2012) E. Nevo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WRKY22 transcription factor mediates dark-induced leaf senescence in Arabidopsis

(2011) Xiang Zhou et al.   MOLECULES AND CELLS

Interaction identification of Zif268 and TATAZF proteins with GC-/AT-rich DNA sequence: A theoretical study

(2010) Bo Yang et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

The HADDOCK web server for data-driven biomolecular docking

(2010) Sjoerd J de Vries et al.   Nature Protocols

Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots

(2008) Elke Mangelsen et al.   BMC GENOMICS

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter

(2008) Xiaolan Wu et al.   PLANT CELL REPORTS

Molecular dynamics simulations and MM–PBSA calculations of the cyclodextrin inclusion complexes with 1-alkanols, para-substituted phenols and substituted imidazoles

(2007) M.I. El-Barghouthi et al.   JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM