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Definition of a High-Confidence Mitochondrial Proteome at Quantitative Scale

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Control of mitochondrial biogenesis and function by the ubiquitin–proteasome system

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Mito-Morphosis: Mitochondrial Fusion, Fission, and Cristae Remodeling as Key Mediators of Cellular Function

(2016) Lena Pernas et al.   Annual Review of Physiology

Ubiquitination of ERMES components by the E3 ligase Rsp5 is involved in mitophagy

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Doa1 targets ubiquitinated substrates for mitochondria-associated degradation

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Ubiquitin chain diversity at a glance

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Incomplete proteasomal degradation of green fluorescent proteins in the context of tandem fluorescent protein timers

(2016) Anton Khmelinskii et al.   MOLECULAR BIOLOGY OF THE CELL

Ubiquilins Chaperone and Triage Mitochondrial Membrane Proteins for Degradation

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Chatty Mitochondria: Keeping Balance in Cellular Protein Homeostasis

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Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system

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A cytosolic network suppressing mitochondria-mediated proteostatic stress and cell death

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Mistargeted mitochondrial proteins activate a proteostatic response in the cytosol

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MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins

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Role of Rsp5 ubiquitin ligase in biogenesis of rRNA, mRNA and tRNA in yeast

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The Protein Import Machinery of Mitochondria—A Regulatory Hub in Metabolism, Stress, and Disease

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A discrete pathway for the transfer of intermembrane space proteins across the outer membrane of mitochondria

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Mitochondrial form and function

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Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling

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Intrinsically Disordered Segments Affect Protein Half-Life in the Cell and during Evolution

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The complexity of recognition of ubiquitinated substrates by the 26S proteasome

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Incorporating key position and amino acid residue features to identify general and species-specific Ubiquitin conjugation sites

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Mitochondrial Dynamics in the Regulation of Nutrient Utilization and Energy Expenditure

(2013) Marc Liesa et al.   Cell Metabolism

The Ubiquitin-Proteasome System Regulates Mitochondrial Intermembrane Space Proteins

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Protein import and oxidative folding in the mitochondrial intermembrane space of intact mammalian cells

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Mitochondrial protein import: Mia40 facilitates Tim22 translocation into the inner membrane of mitochondria

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Atomic-level description of ubiquitin folding

(2013) S. Piana et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial lipid trafficking

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The Role of Mitochondria in Cellular Iron-Sulfur Protein Biogenesis: Mechanisms, Connected Processes, and Diseases

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The Ubiquitin Code

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The Mitochondrial Intermembrane Space: A Hub for Oxidative Folding Linked to Protein Biogenesis

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The MIA pathway: A tight bond between protein transport and oxidative folding in mitochondria

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Mitochondrial protein import: Common principles and physiological networks

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Chaperone–protease networks in mitochondrial protein homeostasis

(2012) Wolfgang Voos   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Mitochondrial quality control: a matter of life and death for neurons

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Atp23 biogenesis reveals a chaperone-like folding activity of Mia40 in the IMS of mitochondria

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Impaired Folding of the Mitochondrial Small TIM Chaperones Induces Clearance by the i-AAA Protease

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In vivo evidence for cooperation of Mia40 and Erv1 in the oxidation of mitochondrial proteins

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Role of the AAA protease Yme1 in folding of proteins in the intermembrane space of mitochondria

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The Size of the Proteasomal Substrate Determines Whether Its Degradation Will Be Mediated by Mono- or Polyubiquitylation

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Tandem fluorescent protein timers for in vivo analysis of protein dynamics

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Mitochondria as sensors and regulators of calcium signalling

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Intracellular protein degradation: From a vague idea thru the lysosome and the ubiquitin–proteasome system and onto human diseases and drug targeting

(2011) Aaron Ciechanover   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

The Essential Ubc4/Ubc5 Function in Yeast Is HECT E3-dependent, and RING E3-dependent Pathways Require Only Monoubiquitin Transfer by Ubc4

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Cysteine-dependent Ubiquitination of Pex18p Is Linked to Cargo Translocation across the Peroxisomal Membrane

(2011) Astrid Hensel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

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Systematic exploration of essential yeast gene function with temperature-sensitive mutants

(2011) Zhijian Li et al.   NATURE BIOTECHNOLOGY

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2011) Zhen Chen et al.   PLoS One

Seamless Gene Tagging by Endonuclease-Driven Homologous Recombination

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Molecular recognition and substrate mimicry drive the electron-transfer process between MIA40 and ALR

(2011) L. Banci et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The N-end rule pathway and regulation by proteolysis

(2011) Alexander Varshavsky   PROTEIN SCIENCE

The Unfolded Protein Response: From Stress Pathway to Homeostatic Regulation

(2011) P. Walter et al.   SCIENCE

Structural insight into the mitochondrial protein import system

(2010) Toshiya Endo et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Regulation and Cellular Roles of Ubiquitin-Specific Deubiquitinating Enzymes

(2009) Francisca E. Reyes-Turcu et al.   Annual Review of Biochemistry

Recognition and Processing of Ubiquitin-Protein Conjugates by the Proteasome

(2009) Daniel Finley   Annual Review of Biochemistry

A Functional Analysis of the Yeast Ubiquitin Ligase Rsp5: The Involvement of the Ubiquitin-Conjugating Enzyme Ubc4 and Poly-Ubiquitination in Ethanol-Induced Down-Regulation of Targeted Proteins

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Physiological functions of the HECT family of ubiquitin ligases

(2009) Daniela Rotin et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Identification, analysis, and prediction of protein ubiquitination sites

(2009) Predrag Radivojac et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Mitochondrial Protein Quality Control by the Proteasome Involves Ubiquitination and the Protease Omi

(2008) Susanne Radke et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A comprehensive strategy enabling high-resolution functional analysis of the yeast genome

(2008) David K Breslow et al.   NATURE METHODS