The complete mitochondrial genome of a cryptic amphipod species from the Gammarus fossarum complex

Widely distributed and regionally isolated! Drivers of genetic structure in Gammarus fossarum in a human-impacted landscape

(2016) Martina Weiss et al.   BMC EVOLUTIONARY BIOLOGY

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

(2016) Robert Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

The legacy of a vanished sea: a high level of diversification within a European freshwater amphipod species complex driven by 15 My of Paratethys regression

(2016) Tomasz Mamos et al.   MOLECULAR ECOLOGY

Drastic underestimation of amphipod biodiversity in the endangered Irano-Anatolian and Caucasus biodiversity hotspots

(2016) Ahmad-Reza Katouzian et al.   Scientific Reports

Mitochondrial metagenomics: letting the genes out of the bottle

(2016) Alex Crampton-Platt et al.   GigaScience

A review of Gammaridae (Crustacea: Amphipoda): the family extent, its evolutionary history, and taxonomic redefinition of genera

(2015) Zhonge Hou et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Phylogenetic analyses of Gammaridae crustacean reveal different diversification patterns among sister lineages in the Tethyan region

(2013) Zhonge Hou et al.   CLADISTICS

Molecular evidence for further overlooked species within the Gammarus fossarum complex (Crustacea: Amphipoda)

(2013) Martina Weiss et al.   HYDROBIOLOGIA

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The mitogenome of Gammarus duebeni (Crustacea Amphipoda): A new gene order and non-neutral sequence evolution of tandem repeats in the control region

(2012) Lukas Krebes et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience