The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle

Consolidating and Exploring Antibiotic Resistance Gene Data Resources

(2016) Basil Britto Xavier et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Interactions between the microbiota and pathogenic bacteria in the gut

(2016) Andreas J. Bäumler et al.   NATURE

Microcins mediate competition among Enterobacteriaceae in the inflamed gut

(2016) Martina Sassone-Corsi et al.   NATURE

Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance

(2016) Rainer Roehe et al.   PLoS Genetics

Cold Shock Proteins: A Minireview with Special Emphasis on Csp-family of Enteropathogenic Yersinia

(2016) Riikka Keto-Timonen et al.   Frontiers in Microbiology

Antimicrobial usage and resistance in beef production

(2016) Andrew Cameron et al.   Journal of Animal Science and Biotechnology

Characterization of the resistome in manure, soil and wastewater from dairy and beef production systems

(2016) Noelle R. Noyes et al.   Scientific Reports

Integrated metabolomic and transcriptome analyses reveal finishing forage affects metabolic pathways related to beef quality and animal welfare

(2016) José A. Carrillo et al.   Scientific Reports

Impact of adding nitrate or increasing the lipid content of two contrasting diets on blood methaemoglobin and performance of two breeds of finishing beef steers

(2015) C-A. Duthie et al.   Animal

Review: Dietary fiber utilization and its effects on physiological functions and gut health of swine

(2015) R. Jha et al.   Animal

The rumen microbial metagenome associated with high methane production in cattle

(2015) R. John Wallace et al.   BMC GENOMICS

Proteobacteria: microbial signature of dysbiosis in gut microbiota

(2015) Na-Ri Shin et al.   TRENDS IN BIOTECHNOLOGY

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Metagenomic Analysis of Antibiotic Resistance Genes in Dairy Cow Feces following Therapeutic Administration of Third Generation Cephalosporin

(2015) Lindsey Chambers et al.   PLoS One

Reply to “Comparison of the Web Tools ARG-ANNOT and ResFinder for Detection of Resistance Genes in Bacteria”

(2014) Sushim Kumar Gupta et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Hydrogen and methane emissions from beef cattle and their rumen microbial community vary with diet, time after feeding and genotype

(2014) John A. Rooke et al.   BRITISH JOURNAL OF NUTRITION

Insights into resistome and stress responses genes in Bubalus bubalis rumen through metagenomic analysis

(2014) Bhaskar Reddy et al.   MOLECULAR BIOLOGY REPORTS

Rapid fucosylation of intestinal epithelium sustains host–commensal symbiosis in sickness

(2014) Joseph M. Pickard et al.   NATURE

Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

(2014) Renee M. Petri et al.   PLoS One

Bacterial Diversity Dynamics Associated with Different Diets and Different Primer Pairs in the Rumen of Kankrej Cattle

(2014) Dipti W. Pitta et al.   PLoS One

Archaeal abundance in post-mortem ruminal digesta may help predict methane emissions from beef cattle

(2014) R. John Wallace et al.   Scientific Reports

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

(2013) Sushim Kumar Gupta et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A View to a Kill: The Bacterial Type VI Secretion System

(2013) Brian T. Ho et al.   Cell Host & Microbe

Antimicrobial peptides and gut microbiota in homeostasis and pathology

(2013) Maureen J. Ostaff et al.   EMBO Molecular Medicine

Role of the enteric microbiota in intestinal homeostasis and inflammation

(2013) Iurii Koboziev et al.   FREE RADICAL BIOLOGY AND MEDICINE

Short communication: Comparison of pH, volatile fatty acids, and microbiome of rumen samples from preweaned calves obtained via cannula or stomach tube

(2013) M. Terré et al.   JOURNAL OF DAIRY SCIENCE

'Blooming' in the gut: how dysbiosis might contribute to pathogen evolution

(2013) Bärbel Stecher et al.   NATURE REVIEWS MICROBIOLOGY

Innate Immune Detection of Flagellin Positively and Negatively Regulates Salmonella Infection

(2013) Marvin A. Lai et al.   PLoS One

The human microbiome as a reservoir of antimicrobial resistance

(2013) John Penders et al.   Frontiers in Microbiology

Evolution of Two-Component Signal Transduction Systems

(2012) Emily J. Capra et al.   Annual Review of Microbiology

Gut and Root Microbiota Commonalities

(2012) Shamayim T. Ramírez-Puebla et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial stress responses as determinants of antimicrobial resistance

(2012) K. Poole   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Distribution and Quantification of Antibiotic Resistant Genes and Bacteria across Agricultural and Non-Agricultural Metagenomes

(2012) Lisa M. Durso et al.   PLoS One

Distribution and diversity of bacterial secretion systems across metagenomic datasets

(2012) Matthieu Barret et al.   Environmental Microbiology Reports

Diet-Induced Dysbiosis of the Intestinal Microbiota and the Effects on Immunity and Disease

(2012) Kirsty Brown et al.   Nutrients

Changes in Bacterial Diversity Associated with Epithelial Tissue in the Beef Cow Rumen during the Transition to a High-Grain Diet

(2011) Yanhong Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antibiotics as Signal Molecules

(2011) Diego Romero et al.   CHEMICAL REVIEWS

A complex relationship: the interaction among symbiotic microbes, invading pathogens and their mammalian host

(2011) M M Curtis et al.   Mucosal Immunology

Involvement of two-component signal transduction system, ComDE, in the regulation of growth and genetic transformation, in the ruminal bacterium Streptococcus bovis

(2010) Narito Asanuma et al.   ANAEROBE

Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis

(2010) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chemical sensing in mammalian host-bacterial commensal associations

(2010) D. T. Hughes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Food Security: The Challenge of Feeding 9 Billion People

(2010) H. C. J. Godfray et al.   SCIENCE

The Battle for Iron between Bacterial Pathogens and Their Vertebrate Hosts

(2010) Eric P. Skaar   PLoS Pathogens

Transfer of Antibiotic Resistance Marker Genes between Lactic Acid Bacteria in Model Rumen and Plant Environments

(2009) N. Toomey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY