Partial Dissociation of Truncated Peptides Influences the Structural Dynamics of the MHCI Binding Groove
出版年份 2017 全文链接
标题
Partial Dissociation of Truncated Peptides Influences the Structural Dynamics of the MHCI Binding Groove
作者
关键词
-
出版物
Frontiers in Immunology
Volume 8, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2017-04-18
DOI
10.3389/fimmu.2017.00408
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Proofreading of Peptide—MHC Complexes through Dynamic Multivalent Interactions
- (2017) Christoph Thomas et al. Frontiers in Immunology
- Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study
- (2016) Pemra Ozbek COMPUTATIONAL BIOLOGY AND CHEMISTRY
- Present Yourself! By MHC Class I and MHC Class II Molecules
- (2016) Kenneth L. Rock et al. TRENDS IN IMMUNOLOGY
- ERAP1-ERAP2 dimers trim MHC I-bound precursor peptides; implications for understanding peptide editing
- (2016) Hanna Chen et al. Scientific Reports
- Molecular mechanism of peptide editing in the tapasin–MHC I complex
- (2016) Olivier Fisette et al. Scientific Reports
- T Cell Antigen Receptor Recognition of Antigen-Presenting Molecules
- (2015) Jamie Rossjohn et al. Annual Review of Immunology
- F pocket flexibility influences the tapasin dependence of two differentially disease-associated MHC Class I proteins
- (2015) Esam T. Abualrous et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Structural Basis for Antigenic Peptide Recognition and Processing by Endoplasmic Reticulum (ER) Aminopeptidase 2
- (2015) Anastasia Mpakali et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- T-Cell Receptor Binding Affects the Dynamics of the Peptide/MHC-I Complex
- (2015) Bernhard Knapp et al. Journal of Chemical Information and Modeling
- Mechanistic Basis for Epitope Proofreading in the Peptide-Loading Complex
- (2015) Gerda Fleischmann et al. JOURNAL OF IMMUNOLOGY
- Coupling between side chain interactions and binding pocket flexibility in HLA-B*44:02 molecules investigated by molecular dynamics simulations
- (2015) Katja Ostermeir et al. MOLECULAR IMMUNOLOGY
- Molecular Dynamics Simulation Reveals the Selective Binding of Human Leukocyte Antigen Alleles Associated with Behçet's Disease
- (2015) Sirilak Kongkaew et al. PLoS One
- Selector function of MHC I molecules is determined by protein plasticity
- (2015) Alistair Bailey et al. Scientific Reports
- The Carboxy Terminus of the Ligand Peptide Determines the Stability of the MHC Class I Molecule H-2Kb: A Combined Molecular Dynamics and Experimental Study
- (2015) Esam Tolba Abualrous et al. PLoS One
- Peptide-dependent Conformational Fluctuation Determines the Stability of the Human Leukocyte Antigen Class I Complex
- (2014) Saeko Yanaka et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Peptide-independent stabilization of MHC class I molecules breaches cellular quality control
- (2014) Z. Hein et al. JOURNAL OF CELL SCIENCE
- Two Polymorphisms Facilitate Differences in Plasticity between Two Chicken Major Histocompatibility Complex Class I Proteins
- (2014) Alistair Bailey et al. PLoS One
- Dipeptides catalyze rapid peptide exchange on MHC class I molecules
- (2014) Sunil Kumar Saini et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pathways of Antigen Processing
- (2013) Janice S. Blum et al. Annual Review of Immunology
- GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
- (2013) Sander Pronk et al. BIOINFORMATICS
- A flexible algorithm for calculating pair interactions on SIMD architectures
- (2013) Szilárd Páll et al. COMPUTER PHYSICS COMMUNICATIONS
- ERAAP and Tapasin Independently Edit the Amino and Carboxyl Termini of MHC Class I Peptides
- (2013) T. Kanaseki et al. JOURNAL OF IMMUNOLOGY
- Antigenic peptide trimming by ER aminopeptidases—Insights from structural studies
- (2013) Efstratios Stratikos et al. MOLECULAR IMMUNOLOGY
- Motional timescale predictions by molecular dynamics simulations: Case study using proline and hydroxyproline sidechain dynamics
- (2013) Abil E. Aliev et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- The MHC I loading complex: a multitasking machinery in adaptive immunity
- (2013) Sabine Hulpke et al. TRENDS IN BIOCHEMICAL SCIENCES
- The Peptide-Receptive Transition State of MHC Class I Molecules: Insight from Structure and Molecular Dynamics
- (2012) M. G. Mage et al. JOURNAL OF IMMUNOLOGY
- A structural and molecular dynamics approach to understanding the peptide-receptive transition state of MHC-I molecules
- (2012) Michael G. Mage et al. MOLECULAR IMMUNOLOGY
- Implementation of force distribution analysis for molecular dynamics simulations
- (2011) Wolfram Stacklies et al. BMC BIOINFORMATICS
- Tapasin dependence of major histocompatibility complex class I molecules correlates with their conformational flexibility
- (2011) Malgorzata Anna Garstka et al. FASEB JOURNAL
- PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKaPredictions
- (2011) Mats H. M. Olsson et al. Journal of Chemical Theory and Computation
- Dynamical Characterization of Two Differentially Disease Associated MHC Class I Proteins in Complex with Viral and Self-Peptides
- (2011) Daniele Narzi et al. JOURNAL OF MOLECULAR BIOLOGY
- A Peptide Filtering Relation Quantifies MHC Class I Peptide Optimization
- (2011) Neil Dalchau et al. PLoS Computational Biology
- Improved side-chain torsion potentials for the Amber ff99SB protein force field
- (2010) Kresten Lindorff-Larsen et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Tapasin edits peptides on MHC class I molecules by accelerating peptide exchange
- (2009) P. V. K. Praveen et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Insights into MHC Class I Peptide Loading from the Structure of the Tapasin-ERp57 Thiol Oxidoreductase Heterodimer
- (2009) Gang Dong et al. IMMUNITY
- Structural Bases for the Affinity-Driven Selection of a Public TCR against a Dominant Human Cytomegalovirus Epitope
- (2009) S. Gras et al. JOURNAL OF IMMUNOLOGY
- Optimized Molecular Dynamics Force Fields Applied to the Helix−Coil Transition of Polypeptides
- (2009) Robert B. Best et al. JOURNAL OF PHYSICAL CHEMISTRY B
- The mechanism of action of tapasin in the peptide exchange on MHC class I molecules determined from kinetics simulation studies
- (2009) Clemens Schneeweiss et al. MOLECULAR IMMUNOLOGY
- Peptide binding to MHC class I and II proteins: New avenues from new methods
- (2009) Rakina Yaneva et al. MOLECULAR IMMUNOLOGY
- Differential tapasin dependence of MHC class I molecules correlates with conformational changes upon peptide dissociation: A molecular dynamics simulation study
- (2008) Florian Sieker et al. MOLECULAR IMMUNOLOGY
- P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation
- (2007) Berk Hess Journal of Chemical Theory and Computation
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