Quantitative Characterization of the T Cell Receptor Repertoire of Naïve and Memory Subsets Using an Integrated Experimental and Computational Pipeline Which Is Robust, Economical, and Versatile

A new mechanism shapes the naïve CD8 + T cell repertoire: the selection for full diversity

(2017) Pedro Gonçalves et al.   MOLECULAR IMMUNOLOGY

Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8 + TCR Repertoires to Immunodominant Viral Antigens

(2017) Guobing Chen et al.   Cell Reports

RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data

(2016) Bram Gerritsen et al.   BIOINFORMATICS

Current status and recent advances of next generation sequencing techniques in immunological repertoire

(2016) X-L Hou et al.   GENES AND IMMUNITY

The sequence of sequencers: The history of sequencing DNA

(2016) James M. Heather et al.   GENOMICS

How many TCR clonotypes does a body maintain?

(2016) Grant Lythe et al.   JOURNAL OF THEORETICAL BIOLOGY

Human memory T cells with a naive phenotype accumulate with aging and respond to persistent viruses

(2016) Vesna Pulko et al.   NATURE IMMUNOLOGY

T cell fate and clonality inference from single-cell transcriptomes

(2016) Michael J T Stubbington et al.   NATURE METHODS

System-wide Analysis of the T Cell Response

(2016) Ruxandra Covacu et al.   Cell Reports

Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq

(2016) David Redmond et al.   Genome Medicine

In Vivo Molecular Dissection of the Effects of HIV-1 in Active Tuberculosis

(2016) Lucy C. K. Bell et al.   PLoS Pathogens

αβ T cell receptors as predictors of health and disease

(2015) Meriem Attaf et al.   Cellular & Molecular Immunology

MiXCR: software for comprehensive adaptive immunity profiling

(2015) Dmitriy A Bolotin et al.   NATURE METHODS

Estimating T-cell repertoire diversity: limitations of classical estimators and a new approach

(2015) Daniel J. Laydon et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Fluctuating fitness shapes the clone-size distribution of immune repertoires

(2015) Jonathan Desponds et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Computational analysis of stochastic heterogeneity in PCR amplification efficiency revealed by single molecule barcoding

(2015) Katharine Best et al.   Scientific Reports

Towards error-free profiling of immune repertoires

(2014) Mikhail Shugay et al.   NATURE METHODS

Assessing T Cell Clonal Size Distribution: A Non-Parametric Approach

(2014) Olesya V. Bolkhovskaya et al.   PLoS One

Diversity and clonal selection in the human T-cell repertoire

(2014) Q. Qi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine

(2013) N. Thomas et al.   BIOINFORMATICS

Fractal Organization of the Human T Cell Repertoire in Health and after Stem Cell Transplantation

(2013) Jeremy Meier et al.   BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION

Immunosequencing: applications of immune repertoire deep sequencing

(2013) Harlan Robins   CURRENT OPINION IN IMMUNOLOGY

Age-Associated Increase of Low-Avidity Cytomegalovirus-Specific CD8+ T Cells That Re-Express CD45RA

(2013) S. J. Griffiths et al.   JOURNAL OF IMMUNOLOGY

Disparate Individual Fates Compose Robust CD8+ T Cell Immunity

(2013) V. R. Buchholz et al.   SCIENCE

The Past, Present, and Future of Immune Repertoire Biology – The Rise of Next-Generation Repertoire Analysis

(2013) Adrien Six et al.   Frontiers in Immunology

Preparing Unbiased T-Cell Receptor and Antibody cDNA Libraries for the Deep Next Generation Sequencing Profiling

(2013) Ilgar Z. Mamedov et al.   Frontiers in Immunology

Chromatin conformation governs T-cell receptor J  gene segment usage

(2012) W. Ndifon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional profiling of innate and adaptive human immune responses to mycobacteria in the tuberculin skin test

(2011) Gillian S. Tomlinson et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Reversible Senescence in Human CD4+CD45RA+CD27- Memory T Cells

(2011) D. Di Mitri et al.   JOURNAL OF IMMUNOLOGY

Human T-cell memory consists mainly of unexpanded clones

(2010) Paul L. Klarenbeek et al.   IMMUNOLOGY LETTERS

High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets

(2010) C. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comprehensive assessment of T-cell receptor  -chain diversity in    T cells

(2009) H. S. Robins et al.   BLOOD

High-Throughput Sequencing of the Zebrafish Antibody Repertoire

(2009) J. A. Weinstein et al.   SCIENCE

Power-Law Distributions in Empirical Data

(2009) Aaron Clauset et al.   SIAM REVIEW