You Are What You Eat: A Genomic Analysis of the Gut Microbiome of Captive and Wild Octopus vulgaris Paralarvae and Their Zooplankton Prey

Diet Composition and Variability of Wild Octopus vulgaris and Alloteuthis media (Cephalopoda) Paralarvae: a Metagenomic Approach

(2017) Lorena Olmos-Pérez et al.   Frontiers in Physiology

Life strategies of cephalopod paralarvae in a coastal upwelling system (NW Iberian Peninsula): insights from zooplankton community and spatio-temporal analyses

(2016) Álvaro Roura et al.   FISHERIES OCEANOGRAPHY

Metagenomics uncovers gaps in amplicon-based detection of microbial diversity

(2016) Emiley A. Eloe-Fadrosh et al.   Nature Microbiology

Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?

(2015) E. Ringø et al.   AQUACULTURE NUTRITION

Guidelines for the Care and Welfare of Cephalopods in Research –A consensus based on an initiative by CephRes, FELASA and the Boyd Group

(2015) Graziano Fiorito et al.   LABORATORY ANIMALS

Microbial Community Composition and Diversity via 16S rRNA Gene Amplicons: Evaluating the Illumina Platform

(2015) Lucas Sinclair et al.   PLoS One

Evaluation of relationship between Chilean octopus (Octopus mimusGould, 1852) egg health condition and the egg bacterial community

(2014) Shunpei Iehata et al.   AQUACULTURE RESEARCH

Changes in the intestinal bacterial community during the growth of white shrimp,Litopenaeus vannamei

(2014) Zhaobin Huang et al.   AQUACULTURE RESEARCH

Pyrosequencing-based characterization of gastrointestinal bacteria of Atlantic salmon (Salmo salarL.) within a commercial mariculture system

(2014) K.Z. Zarkasi et al.   JOURNAL OF APPLIED MICROBIOLOGY

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Microbial diversity in the intestine of olive flounder (Paralichthys olivaceus)

(2013) Do-Hyung Kim et al.   AQUACULTURE

Analysis of bacterial community and bacterial nutritional enzyme activity associated with the digestive tract of wild Chilean octopus (Octopus mimusGould, 1852)

(2013) Shunpei Iehata et al.   AQUACULTURE RESEARCH

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location

(2013) Bastiaan Star et al.   BMC MICROBIOLOGY

Redesign of PCR primers for mitochondrial cytochromecoxidase subunit I for marine invertebrates and application in all-taxa biotic surveys

(2013) J. Geller et al.   Molecular Ecology Resources

Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs

(2013) Orna Mizrahi-Man et al.   PLoS One

Live feed is not a major determinant of the microbiota associated with cod larvae (Gadus morhua)

(2013) Ingrid Bakke et al.   Environmental Microbiology Reports

High temporal variability in bacterial community, silicatein and hsp70 expression during the annual life cycle of Hymeniacidon sinapium (Demospongiae) in China's Yellow Sea

(2012) Heng Cao et al.   AQUACULTURE

Changes in gut-associated flora and bacterial digestive enzymes during the development stages of abalone (Haliotis diversicolor)

(2012) Jing Zhao et al.   AQUACULTURE

Molecular prey identification in wild Octopus vulgaris paralarvae

(2012) Álvaro Roura et al.   MARINE BIOLOGY

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Short-term meso-scale variability of mesozooplankton communities in a coastal upwelling system (NW Spain)

(2012) Álvaro Roura et al.   PROGRESS IN OCEANOGRAPHY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

(2011) Jeffrey J Werner et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

A method for isolating RNA from metabolically active bacterial flora associated with octopus

(2011) M.C. de la Cruz-Leyva et al.   LETTERS IN APPLIED MICROBIOLOGY

What can we learn from genomics approaches in marine ecology? From sequences to eco-systems biology!

(2011) Thomas Mock et al.   Marine Ecology-An Evolutionary Perspective

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

Temporal shifts of the Norway lobster (Nephrops norvegicus) gut bacterial communities

(2010) Alexandra Meziti et al.   FEMS MICROBIOLOGY ECOLOGY

Microbiota of Atlantic cod (Gadus morhua L.) rearing systems at pre- and posthatch stages and the effect of different treatments

(2010) H.L. Lauzon et al.   JOURNAL OF APPLIED MICROBIOLOGY

Changes in the Intestinal Microbiota of Wild Atlantic cod Gadus morhua L. Upon Captive Rearing

(2010) Anusha K. S. Dhanasiri et al.   MICROBIAL ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-frequency coastal upwelling events influence Octopus vulgaris larval dynamics on the NW Iberian shelf

(2009) J Otero et al.   MARINE ECOLOGY PROGRESS SERIES

Comparative Analysis of Pyrosequencing and a Phylogenetic Microarray for Exploring Microbial Community Structures in the Human Distal Intestine

(2009) Marcus J. Claesson et al.   PLoS One

Culture-independent characterization of the bacterial populations associated with cod (Gadus morhua L.) and live feed at an experimental hatchery facility using denaturing gradient gel electrophoresis

(2008) Douglas McIntosh et al.   AQUACULTURE

Analysis of bacterial populations in the gut of developing cod larvae and identification of Vibrio logei, Vibrio anguillarum and Vibrio splendidus as pathogens of cod larvae

(2008) Helen I. Reid et al.   AQUACULTURE

A review on the interactions between gut microbiota and innate immunity of fish: Table 1

(2008) Geovanny D. Gómez et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Distribution of cephalopod paralarvae in relation to the regional oceanography of the western Iberia

(2008) A. Moreno et al.   JOURNAL OF PLANKTON RESEARCH

Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers

(2008) Z. Liu et al.   NUCLEIC ACIDS RESEARCH

Probiotics in aquaculture: The need, principles and mechanisms of action and screening processes

(2007) Aditya Kesarcodi-Watson et al.   AQUACULTURE