Cryptochrome 2 extensively regulates transcription of the chloroplast genome in tomato

The role of plant small RNAs in NB-LRR regulation

(2015) June Hyun Park et al.   Briefings in Functional Genomics

Why chloroplasts and mitochondria retain their own genomes and genetic systems: Colocation for redox regulation of gene expression

(2015) John F. Allen   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pentatricopeptide Repeat Proteins in Plants

(2014) Alice Barkan et al.   Annual Review of Plant Biology

Structure and function of the UV-B photoreceptor UVR8

(2014) Gareth I Jenkins   CURRENT OPINION IN STRUCTURAL BIOLOGY

MicroRNAs Suppress NB Domain Genes in Tomato That Confer Resistance to Fusarium oxysporum

(2014) Shouqiang Ouyang et al.   PLoS Pathogens

Evolutionary rewiring: a modified prokaryotic gene-regulatory pathway in chloroplasts

(2013) S. Puthiyaveetil et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Light-dependent, plastome-wide association of the plastid-encoded RNA polymerase with chloroplast DNA

(2013) Sabrina Finster et al.   PLANT JOURNAL

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Evolution of Three LOV Blue Light Receptor Families in Green Plants and Photosynthetic Stramenopiles: Phototropin, ZTL/FKF1/LKP2 and Aureochrome

(2012) Noriyuki Suetsugu et al.   PLANT AND CELL PHYSIOLOGY

The Primary Transcriptome of Barley Chloroplasts: Numerous Noncoding RNAs and the Dominating Role of the Plastid-Encoded RNA Polymerase

(2012) P. Zhelyazkova et al.   PLANT CELL

Gibberellin and Auxin Influence the Diurnal Transcription Pattern of Photoreceptor Genes via CRY1a in Tomato

(2012) Paolo Facella et al.   PLoS One

MicroRNA regulation of plant innate immune receptors

(2012) F. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein-mediated protection as the predominant mechanism for defining processed mRNA termini in land plant chloroplasts

(2011) Petya Zhelyazkova et al.   NUCLEIC ACIDS RESEARCH

Tomato plants overexpressing cryptochrome 2 reveal altered expression of energy and stress-related gene products in response to diurnal cues

(2011) LOREDANA LOPEZ et al.   PLANT CELL AND ENVIRONMENT

A tiling microarray for global analysis of chloroplast genome expression in cucumber and other plants

(2011) Agnieszka Żmieńko et al.   Plant Methods

Transcriptional Control of Photosynthesis Genes: The Evolutionarily Conserved Regulatory Mechanism in Plastid Genome Function

(2010) Sujith Puthiyaveetil et al.   Genome Biology and Evolution

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

A Gain-of-Function Mutation of Arabidopsis CRYPTOCHROME1 Promotes Flowering

(2010) V. Exner et al.   PLANT PHYSIOLOGY

Whirly1 in chloroplasts associates with intron containing RNAs and rarely co-localizes with nucleoids

(2010) Joanna Melonek et al.   PLANTA

Site-specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts

(2009) Jeannette Pfalz et al.   EMBO JOURNAL

Genome-Wide Analysis of Plastid Gene Expression in Potato Leaf Chloroplasts and Tuber Amyloplasts: Transcriptional and Posttranscriptional Control

(2009) V. T. Valkov et al.   PLANT PHYSIOLOGY

Cluster Analysis and Comparison of Various Chloroplast Transcriptomes and Genes in Arabidopsis thaliana

(2008) W. K. Cho et al.   DNA RESEARCH

The Pentatricopeptide Repeat Protein PPR5 Stabilizes a Specific tRNA Precursor in Maize Chloroplasts

(2008) S. Beick et al.   MOLECULAR AND CELLULAR BIOLOGY

Coordination of gene expression between organellar and nuclear genomes

(2008) Jesse D. Woodson et al.   NATURE REVIEWS GENETICS

Plastid Transcriptomics and Translatomics of Tomato Fruit Development and Chloroplast-to-Chromoplast Differentiation: Chromoplast Gene Expression Largely Serves the Production of a Single Protein

(2008) S. Kahlau et al.   PLANT CELL

Light induction of ArabidopsisSIG1andSIG5transcripts in mature leaves: differential roles of cryptochrome 1 and cryptochrome 2 and dual function of SIG5 in the recognition of plastid promoters

(2008) Yayoi Onda et al.   PLANT JOURNAL

Diurnal and Circadian Rhythms in the Tomato Transcriptome and Their Modulation by Cryptochrome Photoreceptors

(2008) Paolo Facella et al.   PLoS One

Recognition and repair of UV lesions in loop structures of duplex DNA by DASH-type cryptochrome

(2008) R. Pokorny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photoexcited CRY2 Interacts with CIB1 to Regulate Transcription and Floral Initiation in Arabidopsis

(2008) H. Liu et al.   SCIENCE