标题
Convergence of retrotransposons in oomycetes and plants
作者
关键词
Convergent evolution, Retrotransposons, Plants, Oomycetes, Ribonuclease H, Chromodomain
出版物
Mobile DNA
Volume 8, Issue 1, Pages -
出版商
Springer Nature
发表日期
2017-03-14
DOI
10.1186/s13100-017-0087-y
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
- (2016) Vikram Alva et al. NUCLEIC ACIDS RESEARCH
- Convergent Evolution of Ribonuclease H in LTR Retrotransposons and Retroviruses
- (2015) Kirill Ustyantsev et al. MOLECULAR BIOLOGY AND EVOLUTION
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Ancient Origin of the U2 Small Nuclear RNA Gene-Targeting Non-LTR Retrotransposons Utopia
- (2015) Kenji K. Kojima et al. PLoS One
- Horizontal Gene Transfer in Eukaryotic Plant Pathogens
- (2014) Darren Soanes et al. Annual Review of Phytopathology
- Ty3 reverse transcriptase complexed with an RNA-DNA hybrid shows structural and functional asymmetry
- (2014) Elżbieta Nowak et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- CDD: NCBI's conserved domain database
- (2014) Aron Marchler-Bauer et al. NUCLEIC ACIDS RESEARCH
- Acquisition of an Archaea-like ribonuclease H domain by plant L1 retrotransposons supports modular evolution
- (2013) G. Smyshlyaev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Unipro UGENE: a unified bioinformatics toolkit
- (2012) Konstantin Okonechnikov et al. BIOINFORMATICS
- Structural biology of the chromodomain: Form and function
- (2012) Joel C. Eissenberg GENE
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
- (2012) Fredrik Ronquist et al. SYSTEMATIC BIOLOGY
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes
- (2011) Matthew G Links et al. BMC GENOMICS
- Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes
- (2011) T. A. Richards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The evolutionary phylogeny of the oomycete “fungi”
- (2011) Gordon W. Beakes et al. PROTOPLASMA
- Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes
- (2011) Maria Anisimova et al. SYSTEMATIC BIOLOGY
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Evolutionary genomics revealed interkingdom distribution of Tcn1-like chromodomain-containing Gypsy LTR retrotransposons among fungi and plants
- (2010) Olga Novikova et al. BMC GENOMICS
- The Gypsy Database (GyDB) of mobile genetic elements: release 2.0
- (2010) C. Llorens et al. NUCLEIC ACIDS RESEARCH
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Non-long terminal repeat (non-LTR) retrotransposons: mechanisms, recent developments, and unanswered questions
- (2010) Jeffrey S Han Mobile DNA
- Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees
- (2009) Carlos Llorens et al. Biology Direct
- Ribonuclease H: the enzymes in eukaryotes
- (2009) Susana M. Cerritelli et al. FEBS Journal
- Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences
- (2009) Vladimir V. Kapitonov et al. GENE
- BNR - a LINE family fromBeta vulgaris- contains a RRM domain in open reading frame 1 and defines a L1 sub-clade present in diverse plant genomes
- (2009) Tony Heitkam et al. PLANT JOURNAL
- An abundant and heavily truncated non-LTR retrotransposon (LINE) family in Beta vulgaris
- (2009) Torsten Wenke et al. PLANT MOLECULAR BIOLOGY
- Chromodomains direct integration of retrotransposons to heterochromatin
- (2008) X. Gao et al. GENOME RESEARCH
- PROMALS3D: a tool for multiple protein sequence and structure alignments
- (2008) Jimin Pei et al. NUCLEIC ACIDS RESEARCH
- The diversity of retrotransposons and the properties of their reverse transcriptases
- (2008) Thomas H. Eickbush et al. VIRUS RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started