NEAT-FLEX: Predicting the conformational flexibility of amino acids using neuroevolution of augmenting topologies

Effects of protein flexibility and active site water molecules on the prediction of sites of metabolism for cytochrome P450 2C19 substrates

(2016) Junhao Li et al.   Molecular BioSystems

APL: An angle probability list to improve knowledge-based metaheuristics for the three-dimensional protein structure prediction

(2015) Bruno Borguesan et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

Three-dimensional protein structure prediction: Methods and computational strategies

(2014) Márcio Dorn et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

MOIRAE: A computational strategy to extract and represent structural information from experimental protein templates

(2013) Márcio Dorn et al.   SOFT COMPUTING

Extracting Physicochemical Features to Predict Protein Secondary Structure

(2013) Yin-Fu Huang et al.   TheScientificWorldJOURNAL

Modelling dynamics in protein crystal structures by ensemble refinement

(2012) B Tom Burnley et al.   eLife

Protein structure predictions by parallel simulated annealing molecular dynamics using genetic crossover

(2011) Yoshitake Sakae et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Atomic-Level Protein Structure Refinement Using Fragment-Guided Molecular Dynamics Conformation Sampling

(2011) Jian Zhang et al.   STRUCTURE

A Smoothed Backbone-Dependent Rotamer Library for Proteins Derived from Adaptive Kernel Density Estimates and Regressions

(2011) Maxim V. Shapovalov et al.   STRUCTURE

Predicting protein flexibility through the prediction of local structures

(2010) Aurélie Bornot et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Predicting dihedral angle probability distributions for protein coil residues from primary sequence using neural networks

(2009) Glennie Helles et al.   BMC BIOINFORMATICS

Evaluation of template-based models in CASP8 with standard measures

(2009) Domenico Cozzetto et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS