High risk human papilloma viruses (HPVs) are present in benign prostate tissues before development of HPV associated prostate cancer

Worldwide Prevalence of Human Papillomavirus and Relative Risk of Prostate Cancer: A Meta-analysis

(2015) Lin Yang et al.   Scientific Reports

In Vivo and In Vitro Studies Suggest a Possible Involvement of HPV Infection in the Early Stage of Breast Carcinogenesis via APOBEC3B Induction

(2014) Kenji Ohba et al.   PLoS One

Human Papillomavirus E6 Triggers Upregulation of the Antiviral and Cancer Genomic DNA Deaminase APOBEC3B

(2014) Valdimara C. Vieira et al.   mBio

Landscape of DNA Virus Associations across Human Malignant Cancers: Analysis of 3,775 Cases Using RNA-Seq

(2013) J. D. Khoury et al.   JOURNAL OF VIROLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Detection of HPV E7 Oncoviral Protein in Cervical Lesions by a New Antibody

(2012) Valentina Faoro et al.   APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGY

Human Papillomavirus in Benign Prostatic Hyperplasia and Prostatic Adenocarcinoma Patients

(2011) Alice C.-H. Chen et al.   PATHOLOGY & ONCOLOGY RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Viral hit and run-oncogenesis: Genetic and epigenetic scenarios

(2010) Hans Helmut Niller et al.   CANCER LETTERS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS