Using Population and Comparative Genomics to Understand the Genetic Basis of Effector-Driven Fungal Pathogen Evolution
出版年份 2017 全文链接
标题
Using Population and Comparative Genomics to Understand the Genetic Basis of Effector-Driven Fungal Pathogen Evolution
作者
关键词
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出版物
Frontiers in Plant Science
Volume 8, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2017-02-03
DOI
10.3389/fpls.2017.00119
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements
- (2017) Fanny E Hartmann et al. ISME Journal
- Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici
- (2017) Ethan l. Stewart et al. MOLECULAR PLANT PATHOLOGY
- Population Genomics of Fungal and Oomycete Pathogens
- (2016) Niklaus J. Grünwald et al. Annual Review of Phytopathology
- Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements
- (2016) Kentaro Yoshida et al. BMC GENOMICS
- A Tale of Genome Compartmentalization: The Evolution of Virulence Clusters in Smut Fungi
- (2016) Julien Y. Dutheil et al. Genome Biology and Evolution
- Transposons passively and actively contribute to evolution of the two-speed genome of a fungal pathogen
- (2016) Luigi Faino et al. GENOME RESEARCH
- QTL mapping of temperature sensitivity reveals candidate genes for thermal adaptation and growth morphology in the plant pathogenic fungus Zymoseptoria tritici
- (2016) M H Lendenmann et al. HEREDITY
- Dispensable chromosomes inFusarium oxysporumf. sp.lycopersici
- (2016) Ido Vlaardingerbroek et al. MOLECULAR PLANT PATHOLOGY
- Comparative transcriptomic analyses ofZymoseptoria triticistrains show complex lifestyle transitions and intraspecific variability in transcription profiles
- (2016) Javier Palma-Guerrero et al. MOLECULAR PLANT PATHOLOGY
- Genome-Wide Association Study Identifies Novel Candidate Genes for Aggressiveness, Deoxynivalenol Production, and Azole Sensitivity in Natural Field Populations of Fusarium graminearum
- (2016) Firas Talas et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species
- (2016) Fabrizio Menardo et al. NATURE GENETICS
- Hybridization speeds up the emergence and evolution of a new pathogen species
- (2016) Eva H Stukenbrock NATURE GENETICS
- Validation of Genome-Wide Association Studies as a Tool to Identify Virulence Factors inParastagonospora nodorum
- (2016) Yuanyuan Gao et al. PHYTOPATHOLOGY
- The Age of Effectors: Genome-Based Discovery and Applications
- (2016) Hesham A. Y. Gibriel et al. PHYTOPATHOLOGY
- The Evolution of Orphan Regions in Genomes of a Fungal Pathogen of Wheat
- (2016) Clémence Plissonneau et al. mBio
- Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles
- (2016) Raúl Castanera et al. PLoS Genetics
- Kingdom-Wide Analysis of Fungal Small Secreted Proteins (SSPs) Reveals their Potential Role in Host Association
- (2016) Ki-Tae Kim et al. Frontiers in Plant Science
- Population Genomics for Understanding Adaptation in Wild Plant Species
- (2015) Detlef Weigel et al. Annual Review of Genetics
- Durable Resistance of Crops to Disease: A Darwinian Perspective
- (2015) James K.M. Brown Annual Review of Phytopathology
- Fungal Effectors and Plant Susceptibility
- (2015) Libera Lo Presti et al. Annual Review of Plant Biology
- Identification of horizontally transferred genes in the genus Colletotrichum reveals a steady tempo of bacterial to fungal gene transfer
- (2015) Vinicio D Armijos Jaramillo et al. BMC GENOMICS
- Genome-wide analysis of Fusarium graminearum field populations reveals hotspots of recombination
- (2015) Firas Talas et al. BMC GENOMICS
- Molecular diversity of LysM carbohydrate-binding motifs in fungi
- (2015) Gunseli Bayram Akcapinar et al. CURRENT GENETICS
- The two-speed genomes of filamentous pathogens: waltz with plants
- (2015) Suomeng Dong et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Is Zymoseptoria tritici a hemibiotroph?
- (2015) Andrea Sánchez-Vallet et al. FUNGAL GENETICS AND BIOLOGY
- QTL mapping of fungicide sensitivity reveals novel genes and pleiotropy with melanization in the pathogen Zymoseptoria tritici
- (2015) Mark H. Lendenmann et al. FUNGAL GENETICS AND BIOLOGY
- The Impact of Recombination Hotspots on Genome Evolution of a Fungal Plant Pathogen
- (2015) D. Croll et al. GENETICS
- Genomic Signature of Selective Sweeps Illuminates Adaptation ofMedicago truncatulato Root-Associated Microorganisms
- (2015) Maxime Bonhomme et al. MOLECULAR BIOLOGY AND EVOLUTION
- Population genomic analyses reveal possible drivers of population divergence
- (2015) Inger Skrede et al. MOLECULAR ECOLOGY
- Genetic isolation between two recently diverged populations of a symbiotic fungus
- (2015) Sara Branco et al. MOLECULAR ECOLOGY
- The past, present and future of genomic scans for selection
- (2015) Jeffrey D. Jensen et al. MOLECULAR ECOLOGY
- The fungal core effector Pep1 is conserved across smuts of dicots and monocots
- (2015) Christoph Hemetsberger et al. NEW PHYTOLOGIST
- A game of hide and seek between avirulence genesAvrLm4-7andAvrLm3inLeptosphaeria maculans
- (2015) Clémence Plissonneau et al. NEW PHYTOLOGIST
- Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives
- (2015) Gregory J. Baute et al. NEW PHYTOLOGIST
- Effector P: predicting fungal effector proteins from secretomes using machine learning
- (2015) Jana Sperschneider et al. NEW PHYTOLOGIST
- New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation
- (2015) Aoife McLysaght et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Transcriptome and Metabolite Profiling of the Infection Cycle ofZymoseptoria triticion Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition
- (2015) Jason J. Rudd et al. PLANT PHYSIOLOGY
- Novel Mutations Detected in Avirulence Genes Overcoming Tomato Cf Resistance Genes in Isolates of a Japanese Population of Cladosporium fulvum
- (2015) Yuichiro Iida et al. PLoS One
- Rapidly Evolving Genes Are Key Players in Host Specialization and Virulence of the Fungal Wheat Pathogen Zymoseptoria tritici (Mycosphaerella graminicola)
- (2015) Stephan Poppe et al. PLoS Pathogens
- Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi
- (2015) Jana Sperschneider et al. PLoS Pathogens
- Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi
- (2015) Karine de Guillen et al. PLoS Pathogens
- Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes
- (2015) Narayana M. Upadhyaya et al. Frontiers in Plant Science
- Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
- (2015) Amelia Hubbard et al. GENOME BIOLOGY
- Sex or no sex: Evolutionary adaptation occurs regardless
- (2014) Michael F. Seidl et al. BIOESSAYS
- Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi
- (2014) Zhongtao Zhao et al. BMC GENOMICS
- Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
- (2014) Jonathan Grandaubert et al. BMC GENOMICS
- Human high-altitude adaptation: forward genetics meets the HIF pathway
- (2014) Abigail W. Bigham et al. GENES & DEVELOPMENT
- Keeping It Local: Evidence for Positive Selection in Swedish Arabidopsis thaliana
- (2014) Christian D. Huber et al. MOLECULAR BIOLOGY AND EVOLUTION
- Genotype-by-sequencing of the plant-pathogenic fungiPyrenophora teresandSphaerulina musivautilizing Ion Torrent sequence technology
- (2014) Jared M. Leboldus et al. MOLECULAR PLANT PATHOLOGY
- Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations
- (2014) Luke M Evans et al. NATURE GENETICS
- Recombination between Clonal Lineages of the Asexual Fungus Verticillium dahliae Detected by Genotyping by Sequencing
- (2014) Michael G. Milgroom et al. PLoS One
- Quantitative Trait Locus Mapping of Melanization in the Plant Pathogenic Fungus Zymoseptoria tritici
- (2014) Mark H. Lendenmann et al. G3-Genes Genomes Genetics
- Epigenetic Control of Effector Gene Expression in the Plant Pathogenic Fungus Leptosphaeria maculans
- (2014) Jessica L. Soyer et al. PLoS Genetics
- The life cycle of Drosophila orphan genes
- (2014) Nicola Palmieri et al. eLife
- Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors
- (2014) Jana Sperschneider et al. Frontiers in Plant Science
- Detecting Natural Selection in Genomic Data
- (2013) Joseph J. Vitti et al. Annual Review of Genetics
- Selection and Adaptation in the Human Genome
- (2013) Wenqing Fu et al. Annual Review of Genomics and Human Genetics
- Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen
- (2013) R. de Jonge et al. GENOME RESEARCH
- Population genomic footprints of selection and associations with climate in natural populations ofArabidopsis hallerifrom the Alps
- (2013) Martin C. Fischer et al. MOLECULAR ECOLOGY
- Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
- (2013) Quan Long et al. NATURE GENETICS
- Ecological genomics of local adaptation
- (2013) Outi Savolainen et al. NATURE REVIEWS GENETICS
- The advantages and limitations of trait analysis with GWAS: a review
- (2013) Arthur Korte et al. Plant Methods
- A Genome-Wide Association Study Identifies Genomic Regions for Virulence in the Non-Model Organism Heterobasidion annosum s.s
- (2013) Kerstin Dalman et al. PLoS One
- Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
- (2013) R. Levy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis , Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence
- (2013) Viola A. Manning et al. G3-Genes Genomes Genetics
- Breakage-fusion-bridge Cycles and Large Insertions Contribute to the Rapid Evolution of Accessory Chromosomes in a Fungal Pathogen
- (2013) Daniel Croll et al. PLoS Genetics
- On the Prospects of Whole-Genome Association Mapping in Saccharomyces cerevisiae
- (2012) C. F. Connelly et al. GENETICS
- Proto-genes and de novo gene birth
- (2012) Anne-Ruxandra Carvunis et al. NATURE
- Genome evolution in filamentous plant pathogens: why bigger can be better
- (2012) Sylvain Raffaele et al. NATURE REVIEWS MICROBIOLOGY
- A Genetic Mechanism for Emergence of Races in Fusarium oxysporum f. sp. lycopersici: Inactivation of Avirulence Gene AVR1 by Transposon Insertion
- (2012) Keigo Inami et al. PLoS One
- Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species
- (2012) E. H. Stukenbrock et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Tomato immune receptor Ve1 recognizes effector of multiple fungal pathogens uncovered by genome and RNA sequencing
- (2012) R. de Jonge et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Sequential Delivery of Host-Induced Virulence Effectors by Appressoria and Intracellular Hyphae of the Phytopathogen Colletotrichum higginsianum
- (2012) Jochen Kleemann et al. PLoS Pathogens
- The Accessory Genome as a Cradle for Adaptive Evolution in Pathogens
- (2012) Daniel Croll et al. PLoS Pathogens
- Revision of the Nomenclature of the Differential Host-Pathogen Interactions of Venturia inaequalis and Malus
- (2011) Vincent G.M. Bus et al. Annual Review of Phytopathology
- RADSeq: next-generation population genetics
- (2011) J. W. Davey et al. Briefings in Functional Genomics
- The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species
- (2011) E. H. Stukenbrock et al. GENOME RESEARCH
- Genome-wide association analysis of clinical vs. nonclinical origin provides insights into Saccharomyces cerevisiae pathogenesis
- (2011) L. A. H. MULLER et al. MOLECULAR ECOLOGY
- The evolutionary origin of orphan genes
- (2011) Diethard Tautz et al. NATURE REVIEWS GENETICS
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Quantitative Trait Locus (QTL) Mapping Reveals a Role for Unstudied Genes in Aspergillus Virulence
- (2011) Julian K. Christians et al. PLoS One
- Obligate biotrophy features unraveled by the genomic analysis of rust fungi
- (2011) S. Duplessis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Population genomics and local adaptation in wild isolates of a model microbial eukaryote
- (2011) C. E. Ellison et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Adaptation to Climate Across the Arabidopsis thaliana Genome
- (2011) A. M. Hancock et al. SCIENCE
- Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
- (2011) Thierry Rouxel et al. Nature Communications
- Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
- (2011) Stephen B. Goodwin et al. PLoS Genetics
- Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea
- (2011) Joelle Amselem et al. PLoS Genetics
- Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans
- (2010) Sylvain Raffaele et al. BMC GENOMICS
- Using association mapping to dissect the genetic basis of complex traits in plants
- (2010) D. Hall et al. Briefings in Functional Genomics
- Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
- (2010) Li-Jun Ma et al. NATURE
- Towards population genomics of effector-effector target interactions
- (2010) Ryohei Terauchi et al. NEW PHYTOLOGIST
- Horizontal Chromosome Transfer, a Mechanism for the Evolution and Differentiation of a Plant-Pathogenic Fungus
- (2009) Yasunori Akagi et al. EUKARYOTIC CELL
- Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists
- (2009) Gabriela Aguileta et al. INFECTION GENETICS AND EVOLUTION
- Population Genetics of Fungal and Oomycete Effectors Involved in Gene-for-Gene Interactions
- (2009) Eva H. Stukenbrock et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Repeat-Induced Point Mutation (RIP) as an Alternative Mechanism of Evolution Toward Virulence inLeptosphaeria maculans
- (2009) Isabelle Fudal et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
- (2009) Brian J. Haas et al. NATURE
- Genome-wide scans for footprints of natural selection
- (2009) T. K. Oleksyk et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Meiosis Drives Extraordinary Genome Plasticity in the Haploid Fungal Plant Pathogen Mycosphaerella graminicola
- (2009) Alexander H. J. Wittenberg et al. PLoS One
- Looking for Darwin's footprints in the microbial world
- (2009) B. Jesse Shapiro et al. TRENDS IN MICROBIOLOGY
- A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana
- (2009) Paula X. Kover et al. PLoS Genetics
- Ramularia collo-cygni: the biology of an emerging pathogen of barley
- (2008) Dale R. Walters et al. FEMS MICROBIOLOGY LETTERS
- Fine-Scale Population Genetic Structure of Zhikong Scallop (Chlamys farreri): Do Local Marine Currents Drive Geographical Differentiation?
- (2008) Aibin Zhan et al. MARINE BIOTECHNOLOGY
- Comparative Genome Analysis of Filamentous Fungi Reveals Gene Family Expansions Associated with Fungal Pathogenesis
- (2008) Darren M. Soanes et al. PLoS One
- Suppression of Plant Resistance Gene-Based Immunity by a Fungal Effector
- (2008) Petra M. Houterman et al. PLoS Pathogens
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