Host-selected mutations converging on a global regulator drive an adaptive leap towards symbiosis in bacteria
出版年份 2017 全文链接
标题
Host-selected mutations converging on a global regulator drive an adaptive leap towards symbiosis in bacteria
作者
关键词
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出版物
eLife
Volume 6, Issue -, Pages -
出版商
eLife Sciences Organisation, Ltd.
发表日期
2017-04-27
DOI
10.7554/elife.24414
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- The Histidine Kinase BinK Is a Negative Regulator of Biofilm Formation and Squid Colonization
- (2016) John F. Brooks et al. JOURNAL OF BACTERIOLOGY
- Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations inVibrio choleraeandVibrio fischeri
- (2016) Marcus M. Dillon et al. MOLECULAR BIOLOGY AND EVOLUTION
- The genetic consequences of selection in natural populations
- (2016) Timothy J. Thurman et al. MOLECULAR ECOLOGY
- Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness
- (2016) Yinhua Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of a Chemoreceptor in Pseudomonas aeruginosa That Specifically Mediates Chemotaxis Toward α-Ketoglutarate
- (2016) David Martín-Mora et al. Frontiers in Microbiology
- Gene Splicing by Overlap Extension: Tailor-Made Genes Using the Polymerase Chain Reaction
- (2016) Robert M. Horton et al. BIOTECHNIQUES
- Spontaneous phenotypic suppression of GacA-defective Vibrio fischeri is achieved via mutation of csrA and ihfA
- (2015) Randi L. Foxall et al. BMC MICROBIOLOGY
- AntisocialluxOMutants Provide a Stationary-Phase Survival Advantage in Vibrio fischeri ES114
- (2015) John H. Kimbrough et al. JOURNAL OF BACTERIOLOGY
- Quorum Sensing Is Accompanied by Global Metabolic Changes in the Opportunistic Human Pathogen Pseudomonas aeruginosa
- (2015) Peter W. Davenport et al. JOURNAL OF BACTERIOLOGY
- TfoX-Based Genetic Mapping Identifies Vibrio fischeri Strain-Level Differences and Reveals a Common Lineage of Laboratory Strains
- (2015) John F. Brooks et al. JOURNAL OF BACTERIOLOGY
- Evolutionary Transition from Pathogenicity to Commensalism: Global Regulator Mutations Mediate Fitness Gains through Virulence Attenuation
- (2015) Gunther Jansen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Rate of novel host invasion affects adaptability of evolving RNA virus lineages
- (2015) Valerie J. Morley et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system
- (2015) Tiffany B. Taylor et al. SCIENCE
- A Single Host-Derived Glycan Impacts Key Regulatory Nodes of Symbiont Metabolism in a Coevolved Mutualism
- (2015) Min Pan et al. mBio
- Implementing a Class of Permutation Tests: ThecoinPackage
- (2015) Torsten Hothorn et al. Journal of Statistical Software
- Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes
- (2015) Michael Baym et al. PLoS One
- A Comparison of Methods to Measure Fitness in Escherichia coli
- (2015) Michael J. Wiser et al. PLoS One
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Effect of sypQ gene on poly-N-acetylglucosamine biosynthesis in Vibrio parahaemolyticus and its role in infection process
- (2014) Libin Ye et al. GLYCOBIOLOGY
- Identification of a Novel Matrix Protein That Promotes Biofilm Maturation in Vibrio fischeri
- (2014) Valerie A. Ray et al. JOURNAL OF BACTERIOLOGY
- Protection from Intestinal Inflammation by Bacterial Exopolysaccharides
- (2014) S. E. Jones et al. JOURNAL OF IMMUNOLOGY
- Ecological Diversification of Vibrio fischeri Serially Passaged for 500 Generations in Novel Squid Host Euprymna tasmanica
- (2014) William Soto et al. MICROBIAL ECOLOGY
- Automated Reconstruction of Whole-Genome Phylogenies from Short-Sequence Reads
- (2014) Frederic Bertels et al. MOLECULAR BIOLOGY AND EVOLUTION
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Parallel independent evolution of pathogenicity within the genus Yersinia
- (2014) S. Reuter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial quorum sensing and metabolic slowing in a cooperative population
- (2014) J. H. An et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The chemistry of negotiation: Rhythmic, glycan-driven acidification in a symbiotic conversation
- (2014) Julia A. Schwartzman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Crosstalk and the evolution of specificity in two-component signaling
- (2014) M. A. Rowland et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Microbial experimental evolution as a novel research approach in the Vibrionaceae and squid-Vibrio symbiosis
- (2014) William Soto et al. Frontiers in Microbiology
- Associations and dynamics of Vibrionaceae in the environment, from the genus to the population level
- (2014) Alison F. Takemura et al. Frontiers in Microbiology
- The putative oligosaccharide translocase SypK connects biofilm formation with quorum signaling inVibrio fischeri
- (2014) Tim Miyashiro et al. MicrobiologyOpen
- On the optimal trimming of high-throughput mRNA sequence data
- (2014) Matthew D. MacManes Frontiers in Genetics
- Acyl-Homoserine Lactone Quorum Sensing: From Evolution to Application
- (2013) Martin Schuster et al. Annual Review of Microbiology
- The Iron-Dependent Regulator Fur Controls Pheromone Signaling Systems and Luminescence in the Squid Symbiont Vibrio fischeri ES114
- (2013) Alecia N. Septer et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The first engagement of partners in theEuprymna scolopes-Vibrio fischerisymbiosis is a two-step process initiated by a few environmental symbiont cells
- (2013) Melissa A. Altura et al. ENVIRONMENTAL MICROBIOLOGY
- Quorum Sensing in the Squid-Vibrio Symbiosis
- (2013) Subhash Verma et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Experimental evolution of nodule intracellular infection in legume symbionts
- (2013) Su Hua Guan et al. ISME Journal
- The Role of Cell Surface Architecture of Lactobacilli in Host-Microbe Interactions in the Gastrointestinal Tract
- (2013) Ranjita Sengupta et al. MEDIATORS OF INFLAMMATION
- Features governing symbiont persistence in the squid-vibrio association
- (2013) Eric J. Koch et al. MOLECULAR ECOLOGY
- Innate immune recognition of the microbiota promotes host-microbial symbiosis
- (2013) Hiutung Chu et al. NATURE IMMUNOLOGY
- Long-Term Dynamics of Adaptation in Asexual Populations
- (2013) M. J. Wiser et al. SCIENCE
- Evolutionary Tuning of Protein Expression Levels of a Positively Autoregulated Two-Component System
- (2013) Rong Gao et al. PLoS Genetics
- Interactions ofCandida albicanswith host epithelial surfaces
- (2013) David W. Williams et al. Journal of Oral Microbiology
- Evolution of Two-Component Signal Transduction Systems
- (2012) Emily J. Capra et al. Annual Review of Microbiology
- Squid-Derived Chitin Oligosaccharides Are a Chemotactic Signal during Colonization by Vibrio fischeri
- (2012) Mark J. Mandel et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- LOST IN THE MAP
- (2012) Michael Travisano et al. EVOLUTION
- Roles of the Structural Symbiosis Polysaccharide (syp) Genes in Host Colonization, Biofilm Formation, and Polysaccharide Biosynthesis in Vibrio fischeri
- (2012) S. Shibata et al. JOURNAL OF BACTERIOLOGY
- Shedding light on bioluminescence regulation in Vibrio fischeri
- (2012) Tim Miyashiro et al. MOLECULAR MICROBIOLOGY
- The response regulator SypE controls biofilm formation and colonization through phosphorylation of thesyp-encoded regulator SypA inVibrio fischeri
- (2012) Andrew R. Morris et al. MOLECULAR MICROBIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- How glycan metabolism shapes the human gut microbiota
- (2012) Nicole M. Koropatkin et al. NATURE REVIEWS MICROBIOLOGY
- Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load
- (2012) S. Wielgoss et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bacterial Quorum Sensing and Metabolic Incentives to Cooperate
- (2012) A. A. Dandekar et al. SCIENCE
- Experimental evolution
- (2012) Tadeusz J. Kawecki et al. TRENDS IN ECOLOGY & EVOLUTION
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- The haem-uptake gene cluster in Vibrio fischeri is regulated by Fur and contributes to symbiotic colonization
- (2011) Alecia N. Septer et al. ENVIRONMENTAL MICROBIOLOGY
- Multihost Experimental Evolution of a Plant RNA Virus Reveals Local Adaptation and Host-Specific Mutations
- (2011) S. Bedhomme et al. MOLECULAR BIOLOGY AND EVOLUTION
- The N-acetyl-d-glucosamine repressor NagC of Vibrio fischeri facilitates colonization of Euprymna scolopes
- (2011) Tim Miyashiro et al. MOLECULAR MICROBIOLOGY
- The occurrence of chitin in the hemocytes of invertebrates
- (2011) Elizabeth A.C. Heath-Heckman et al. ZOOLOGY
- Microtiter Dish Biofilm Formation Assay
- (2011) George A. O'Toole Jove-Journal of Visualized Experiments
- On measuring selection in experimental evolution
- (2010) L.-M. Chevin Biology Letters
- The Cyclic-di-GMP Phosphodiesterase BinA Negatively Regulates Cellulose-Containing Biofilms in Vibrio fischeri
- (2010) C. M. Bassis et al. JOURNAL OF BACTERIOLOGY
- A single qrr gene is necessary and sufficient for LuxO-mediated regulation in Vibrio fischeri
- (2010) Tim Miyashiro et al. MOLECULAR MICROBIOLOGY
- Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis
- (2010) A. M. Wier et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Breaking the language barrier: experimental evolution of non-native Vibrio fischeri in squid tailors luminescence to the host
- (2010) Brian M. Schuster et al. SYMBIOSIS
- Experimental Evolution of a Plant Pathogen into a Legume Symbiont
- (2010) Marta Marchetti et al. PLOS BIOLOGY
- Obtaining Hemocytes from the Hawaiian Bobtail Squid Euprymna scolopes and Observing their Adherence to Symbiotic and Non-Symbiotic Bacteria
- (2010) Andrew J. Collins et al. Jove-Journal of Visualized Experiments
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- The S Helix Mediates Signal Transmission as a HAMP Domain Coiled-Coil Extension in the NarX Nitrate Sensor from Escherichia coli K-12
- (2009) V. Stewart et al. JOURNAL OF BACTERIOLOGY
- An intricate network of regulators controls biofilm formation and colonization byVibrio fischeri
- (2009) Karen L. Visick MOLECULAR MICROBIOLOGY
- A single regulatory gene is sufficient to alter bacterial host range
- (2009) Mark J. Mandel et al. NATURE
- Vibrio biofilms: so much the same yet so different
- (2009) Fitnat H. Yildiz et al. TRENDS IN MICROBIOLOGY
- Population Structure of Vibrio fischeri within the Light Organs of Euprymna scolopes Squid from Two Oahu (Hawaii) Populations
- (2008) M. S. Wollenberg et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Effective Mutagenesis of Vibrio fischeri by Using Hyperactive Mini-Tn5 Derivatives
- (2008) N. L. Lyell et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Recognition between symbioticVibrio fischeriand the haemocytes ofEuprymna scolopes
- (2008) Spencer V. Nyholm et al. ENVIRONMENTAL MICROBIOLOGY
- Evolutionary origins of invasive populations
- (2008) Carol Eunmi Lee et al. Evolutionary Applications
- Signal integration in bacterial two-component regulatory systems
- (2008) A. Y. Mitrophanov et al. GENES & DEVELOPMENT
- RscS Functions Upstream of SypG To Control the syp Locus and Biofilm Formation in Vibrio fischeri
- (2008) E. A. Hussa et al. JOURNAL OF BACTERIOLOGY
- The Putative Hybrid Sensor Kinase SypF Coordinates Biofilm Formation in Vibrio fischeri by Acting Upstream of Two Response Regulators, SypG and VpsR
- (2008) C. L. Darnell et al. JOURNAL OF BACTERIOLOGY
- A microbial symbiosis factor prevents intestinal inflammatory disease
- (2008) Sarkis K. Mazmanian et al. NATURE
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