Ten quick tips for machine learning in computational biology

Ten Simple Rules to Enable Multi-site Collaborations through Data Sharing

(2017) Mary Regina Boland et al.   PLoS Computational Biology

Ontology-Based Prediction and Prioritization of Gene Functional Annotations

(2016) Davide Chicco et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Computational algorithms to predict Gene Ontology annotations

(2015) Pietro Pinoli et al.   BMC BIOINFORMATICS

Disadvantages of using the area under the receiver operating characteristic curve to assess imaging tests: A discussion and proposal for an alternative approach

(2015) Steve Halligan et al.   EUROPEAN RADIOLOGY

Software Suite for Gene and Protein Annotation Prediction and Similarity Search

(2015) Davide Chicco et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Ten Simple Rules for a Computational Biologist’s Laboratory Notebook

(2015) Santiago Schnell   PLoS Computational Biology

Ten Simple Rules for Reducing Overoptimistic Reporting in Methodological Computational Research

(2015) Anne-Laure Boulesteix   PLoS Computational Biology

The Precision-Recall Plot Is More Informative than the ROC Plot When Evaluating Binary Classifiers on Imbalanced Datasets

(2015) Takaya Saito et al.   PLoS One

Ten Simple Rules for Effective Computational Research

(2014) James M. Osborne et al.   PLoS Computational Biology

Ten Simple Rules for Reproducible Computational Research

(2013) Geir Kjetil Sandve et al.   PLoS Computational Biology

Machine learning and genome annotation: a match meant to be?

(2013) Kevin Y Yip et al.   GENOME BIOLOGY

A few useful things to know about machine learning

(2012) Pedro Domingos   COMMUNICATIONS OF THE ACM

Gene Ontology Annotations and Resources

(2012)   NUCLEIC ACIDS RESEARCH

Ten Simple Rules for the Open Development of Scientific Software

(2012) Andreas Prlić et al.   PLoS Computational Biology

An approach based on probabilistic neural network for diagnosis of Mesothelioma’s disease

(2011) Orhan Er et al.   COMPUTERS & ELECTRICAL ENGINEERING

Ten Simple Rules for Getting Help from Online Scientific Communities

(2011) Giovanni M. Dall'Olio et al.   PLoS Computational Biology

BioStar: An Online Question & Answer Resource for the Bioinformatics Community

(2011) Laurence D. Parnell et al.   PLoS Computational Biology

Publish your computer code: it is good enough

(2010) Nick Barnes   NATURE

Learning from Imbalanced Data

(2009) Haibo He et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

A Quick Guide to Organizing Computational Biology Projects

(2009) William Stafford Noble   PLoS Computational Biology

A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification

(2008) Alexander Statnikov et al.   BMC BIOINFORMATICS