Comparative genome analysis of VSP-II and SNPs reveals heterogenic variation in contemporary strains of Vibrio cholerae O1 isolated from cholera patients in Kolkata, India

Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella Enteritidis

(2016) T. INNS et al.   EPIDEMIOLOGY AND INFECTION

CtxB1 outcompetes CtxB7 in Vibrio cholerae O1, Bangladesh

(2016) Mahamud-ur Rashid et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Origins of the current seventh cholera pandemic

(2016) Dalong Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-genome sequence comparisons reveal the evolution of Vibrio cholerae O1

(2015) Eun Jin Kim et al.   TRENDS IN MICROBIOLOGY

Genetic Traits of Vibrio cholerae O1 Haitian Isolates That Are Absent in Contemporary Strains from Kolkata, India

(2014) Priyanka Ghosh et al.   PLoS One

Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever

(2014) Z. Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

The Population Structure of Vibrio cholerae from the Chandigarh Region of Northern India

(2014) Moataz Abd El Ghany et al.   PLoS Neglected Tropical Diseases

Haitian Variant tcpA in Vibrio cholerae O1 El Tor Strains in Kolkata, India

(2013) P. Ghosh et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Horizontal gene transfer of a genetic island encoding a type III secretion system distributed inVibrio cholerae

(2013) Masatomo Morita et al.   MICROBIOLOGY AND IMMUNOLOGY

The global burden of cholera

(2012) Mohammad Ali et al.   BULLETIN OF THE WORLD HEALTH ORGANIZATION

Novel Cholix Toxin Variants, ADP-Ribosylating Toxins in Vibrio cholerae Non-O1/Non-O139 Strains, and Their Pathogenicity

(2012) Sharda Prasad Awasthi et al.   INFECTION AND IMMUNITY

Development and Evaluation of a PCR Assay for Tracking the Emergence and Dissemination of Haitian Variant ctxB in Vibrio cholerae O1 Strains Isolated from Kolkata, India

(2012) A. Naha et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Vibrio cholerae Classical Biotype Strains Reveal Distinct Signatures in Mexico

(2012) M. Alam et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genotypic and PFGE/MLVA Analyses of Vibrio cholerae O1: Geographical Spread and Temporal Changes during the 2007–2010 Cholera Outbreaks in Thailand

(2012) Kazuhisa Okada et al.   PLoS One

Genomic diversity of 2010 Haitian cholera outbreak strains

(2012) N. A. Hasan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

New V. cholerae atypical El Tor variant emerged during the 2006 epidemic outbreak in Angola

(2011) Daniela Ceccarelli et al.   BMC MICROBIOLOGY

Genetic characterization of Vibrio cholerae O1 strains isolated in Zambia during 1996–2004 possessing the unique VSP-II region of El Tor variant

(2011) N. A. BHUIYAN et al.   EPIDEMIOLOGY AND INFECTION

Assemblathon 1: A competitive assessment of de novo short read assembly methods

(2011) D. Earl et al.   GENOME RESEARCH

Characterization of Vibrio cholerae O1 El Tor Biotype Variant Clinical Isolates from Bangladesh and Haiti, Including a Molecular Genetic Analysis of Virulence Genes

(2011) Mike S. Son et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Evidence for several waves of global transmission in the seventh cholera pandemic

(2011) Ankur Mutreja et al.   NATURE

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Population Genetics of Vibrio cholerae from Nepal in 2010: Evidence on the Origin of the Haitian Outbreak

(2011) R. S. Hendriksen et al.   mBio

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Emergence and genetic diversity of El Tor Vibrio cholerae O1 that possess classical biotype ctxB among travel-associated cases of cholera in Japan

(2010) M. Morita et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Diversity and distribution of cholix toxin, a novel ADP-ribosylating factor from Vibrio cholerae

(2010) Alexandra E. Purdy et al.   Environmental Microbiology Reports

Emerging trends in the etiology of enteric pathogens as evidenced from an active surveillance of hospitalized diarrhoeal patients in Kolkata, India

(2010) Gopinath Nair et al.   Gut Pathogens

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

(2009) Daniel C. Koboldt et al.   BIOINFORMATICS

Peruvian Vibrio cholerae O1 El Tor strains possess a distinct region in the Vibrio seventh pandemic island-II that differentiates them from the prototype seventh pandemic El Tor strains

(2009) S. Nusrin et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Evolution of new variants of Vibrio cholerae O1

(2009) Ashrafus Safa et al.   TRENDS IN MICROBIOLOGY

Development and validation of a mismatch amplification mutation PCR assay to monitor the dissemination of an emerging variant ofVibrio choleraeO1 biotype El Tor

(2008) Masatomo Morita et al.   MICROBIOLOGY AND IMMUNOLOGY

A Recalibrated Molecular Clock and Independent Origins for the Cholera Pandemic Clones

(2008) Lu Feng et al.   PLoS One