Genome-wide exonic small interference RNA-mediated gene silencing regulates sexual reproduction in the homothallic fungus Fusarium graminearum

RNAi pathways in Mucor : A tale of proteins, small RNAs and functional diversity

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Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes

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Genome-Wide Investigation Using sRNA-Seq, Degradome-Seq and Transcriptome-Seq Reveals Regulatory Networks of microRNAs and Their Target Genes in Soybean during Soybean mosaic virus Infection

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sRNA profiling in Aspergillus flavus reveals differentially expressed miRNA-like RNAs response to water activity and temperature

(2015) Youhuang Bai et al.   FUNGAL GENETICS AND BIOLOGY

Complex Formation of RNA Silencing Proteins in the Perinuclear Region of Neurospora crassa

(2015) Logan M. Decker et al.   GENETICS

Pathogen small RNAs: a new class of effectors for pathogen attacks

(2015) Ming Wang et al.   MOLECULAR PLANT PATHOLOGY

Characterization of RNA silencing components in the plant pathogenic fungus Fusarium graminearum

(2015) Yun Chen et al.   Scientific Reports

A Large-Scale Functional Analysis of Putative Target Genes of Mating-Type Loci Provides Insight into the Regulation of Sexual Development of the Cereal Pathogen Fusarium graminearum

(2015) Hee-Kyoung Kim et al.   PLoS Genetics

Complex Formation of RNA Silencing Proteins in the Perinuclear Region of Neurospora crassa

(2015) Logan M. Decker et al.   GENETICS

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New wind in the sails: improving the agronomic value of crop plants through RNAi-mediated gene silencing

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Exploring MicroRNA-Like Small RNAs in the Filamentous Fungus Fusarium oxysporum

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Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae

(2013) Vidhyavathi Raman et al.   BMC GENOMICS

Identification of Small RNAs Associated with Meiotic Silencing by Unpaired DNA

(2013) Thomas M. Hammond et al.   GENETICS

Functional Diversity of RNAi-Associated sRNAs in Fungi

(2013) Francisco Nicolás et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The RNAi machinery regulates growth and development in the filamentous fungusTrichoderma atroviride

(2013) Nohemi Carreras-Villaseñor et al.   MOLECULAR MICROBIOLOGY

AbaA Regulates Conidiogenesis in the Ascomycete Fungus Fusarium graminearum

(2013) Hokyoung Son et al.   PLoS One

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

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Identification of MicroRNA-Like RNAs in Mycelial and Yeast Phases of the Thermal Dimorphic Fungus Penicillium marneffei

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RNA Interference Pathways in Fungi: Mechanisms and Functions

(2012) Shwu-Shin Chang et al.   Annual Review of Microbiology

Mitochondrial Carnitine-Dependent Acetyl Coenzyme A Transport Is Required for Normal Sexual and Asexual Development of the Ascomycete Gibberella zeae

(2012) Hokyoung Son et al.   EUKARYOTIC CELL

Differential roles of pyruvate decarboxylase in aerial and embedded mycelia of the ascomycete Gibberella zeae

(2012) Hokyoung Son et al.   FEMS MICROBIOLOGY LETTERS

Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology

(2012) Usha Rani Sikhakolli et al.   FUNGAL GENETICS AND BIOLOGY

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Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

(2011) Cristiano C Nunes et al.   BMC GENOMICS

RNA Interference in Fungi: Pathways, Functions, and Applications

(2011) Yunkun Dang et al.   EUKARYOTIC CELL

Functional Analyses of Two Acetyl Coenzyme A Synthetases in the Ascomycete Gibberella zeae

(2011) Seunghoon Lee et al.   EUKARYOTIC CELL

Meiotic silencing in the homothallic fungus Gibberella zeae

(2011) Hokyoung Son et al.   Fungal Biology

ATP citrate lyase is required for normal sexual and asexual development in Gibberella zeae

(2011) Hokyoung Son et al.   FUNGAL GENETICS AND BIOLOGY

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(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

(2011) Fran Supek et al.   PLoS One

A Phenome-Based Functional Analysis of Transcription Factors in the Cereal Head Blight Fungus, Fusarium graminearum

(2011) Hokyoung Son et al.   PLoS Pathogens

Functional Analysis of the Kinome of the Wheat Scab Fungus Fusarium graminearum

(2011) Chenfang Wang et al.   PLoS Pathogens

Manipulation of FASTQ data with Galaxy

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Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi

(2010) X. Wang et al.   GENES & DEVELOPMENT

Diverse Pathways Generate MicroRNA-like RNAs and Dicer-Independent Small Interfering RNAs in Fungi

(2010) Heng-Chi Lee et al.   MOLECULAR CELL

FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum

(2010) P. Wong et al.   NUCLEIC ACIDS RESEARCH

Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides

(2010) Francisco Esteban Nicolas et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Triacylglyceride Metabolism byFusarium graminearumDuring Colonization and Sexual Development on Wheat

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qiRNA is a new type of small interfering RNA induced by DNA damage

(2009) Heng-Chi Lee et al.   NATURE

Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome

(2009) Marcelo A German et al.   Nature Protocols

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Expression and Function of Sex Pheromones and Receptors in the Homothallic AscomyceteGibberella zeae

(2008) Jungkwan Lee et al.   EUKARYOTIC CELL

Characterization of Hypovirus-Derived Small RNAs Generated in the Chestnut Blight Fungus by an Inducible DCL-2-Dependent Pathway

(2008) X. Zhang et al.   JOURNAL OF VIROLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

DCL-1 colocalizes with other components of the MSUD machinery and is required for silencing

(2007) William G. Alexander et al.   FUNGAL GENETICS AND BIOLOGY