Inferring fitness landscapes and selection on phenotypic states from single-cell genealogical data

Noise and Epigenetic Inheritance of Single-Cell Division Times Influence Population Fitness

(2016) Bram Cerulus et al.   CURRENT BIOLOGY

Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios

(2016) Philipp S. Hoppe et al.   NATURE

Noise-driven growth rate gain in clonal cellular populations

(2016) Mikihiro Hashimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Viral evolution: beyond drift and shift

(2015) Benjamin D Greenbaum et al.   CURRENT OPINION IN MICROBIOLOGY

Network plasticity of pluripotency transcription factors in embryonic stem cells

(2015) Adam Filipczyk et al.   NATURE CELL BIOLOGY

A functional perspective on phenotypic heterogeneity in microorganisms

(2015) Martin Ackermann   NATURE REVIEWS MICROBIOLOGY

Fluctuation Relations of Fitness and Information in Population Dynamics

(2015) Tetsuya J. Kobayashi et al.   PHYSICAL REVIEW LETTERS

Interplay of Cell Shape and Division Orientation Promotes Robust Morphogenesis of Developing Epithelia

(2014) Fengzhu Xiong et al.   CELL

A synchronized global sweep of the internal genes of modern avian influenza virus

(2014) Michael Worobey et al.   NATURE

A predictive fitness model for influenza

(2014) Marta Łuksza et al.   NATURE

Advances in whole-embryo imaging: a quantitative transition is underway

(2014) Periklis Pantazis et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A model for the generation and transmission of variations in evolution

(2014) O. Rivoire et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Virulence and Pathogenesis of HIV-1 Infection: An Evolutionary Perspective

(2014) C. Fraser et al.   SCIENCE

Predicting evolution from the shape of genealogical trees

(2014) Richard A Neher et al.   eLife

RETRACTED: (p)ppGpp Controls Bacterial Persistence by Stochastic Induction of Toxin-Antitoxin Activity

(2013) Etienne Maisonneuve et al.   CELL

Effect of Phenotypic Selection on Stochastic Gene Expression

(2013) Thierry Mora et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Dynamic Persistence of Antibiotic-Stressed Mycobacteria

(2013) Y. Wakamoto et al.   SCIENCE

Natural selection. V. How to read the fundamental equations of evolutionary change in terms of information theory

(2012) S. A. Frank   JOURNAL OF EVOLUTIONARY BIOLOGY

Pre-Disposition and Epigenetics Govern Variation in Bacterial Survival upon Stress

(2012) Ming Ni et al.   PLoS Genetics

Cellular Decision Making and Biological Noise: From Microbes to Mammals

(2011) Gábor Balázsi et al.   CELL

OPTIMAL LINEAGE PRINCIPLE FOR AGE-STRUCTURED POPULATIONS

(2011) Yuichi Wakamoto et al.   EVOLUTION

Cdks and cyclins link G1length and differentiation of embryonic, neural and hematopoietic stem cells

(2010) Christian Lange et al.   CELL CYCLE

INFERRING FITNESS LANDSCAPES

(2010) Ruth G. Shaw et al.   EVOLUTION

Individual histories and selection in heterogeneous populations

(2010) S. Leibler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Self-destructive cooperation mediated by phenotypic noise

(2008) Martin Ackermann et al.   NATURE

Automated analysis of embryonic gene expression with cellular resolution in C. elegans

(2008) John Isaac Murray et al.   NATURE METHODS

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE

Regulatory Control and the Costs and Benefits of Biochemical Noise

(2008) Sorin Tănase-Nicola et al.   PLoS Computational Biology