Active Vertex Model for cell-resolution description of epithelial tissue mechanics

Vertex stability and topological transitions in vertex models of foams and epithelia

(2017) Meryl A. Spencer et al.   EUROPEAN PHYSICAL JOURNAL E

Interface Contractility between Differently Fated Cells Drives Cell Elimination and Cyst Formation

(2016) Christina Bielmeier et al.   CURRENT BIOLOGY

Combined changes in Wnt signaling response and contact inhibition induce altered proliferation in radiation-treated intestinal crypts

(2016) S.-J. Dunn et al.   MOLECULAR BIOLOGY OF THE CELL

Contact inhibition of locomotion and mechanical cross-talk between cell–cell and cell–substrate adhesion determine the pattern of junctional tension in epithelial cell aggregates

(2016) Luke Coburn et al.   MOLECULAR BIOLOGY OF THE CELL

Contact inhibition of locomotion determines cell–cell and cell–substrate forces in tissues

(2016) Juliane Zimmermann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Motility-Driven Glass and Jamming Transitions in Biological Tissues

(2016) Dapeng Bi et al.   Physical Review X

TissueMiner: A multiscale analysis toolkit to quantify how cellular processes create tissue dynamics

(2016) Raphaël Etournay et al.   eLife

Non-straight cell edges are important to invasion and engulfment as demonstrated by cell mechanics model

(2015) Matthew C. Perrone et al.   Biomechanics and Modeling in Mechanobiology

A Mechanistic Collective Cell Model for Epithelial Colony Growth and Contact Inhibition

(2015) Sebastian Aland et al.   BIOPHYSICAL JOURNAL

Fundamental physical cellular constraints drive self-organization of tissues

(2015) D. Sanchez-Gutierrez et al.   EMBO JOURNAL

Modeling the finger instability in an expanding cell monolayer

(2015) Victoria Tarle et al.   Integrative Biology

A molecular mechanotransduction pathway regulates collective migration of epithelial cells

(2015) Tamal Das et al.   NATURE CELL BIOLOGY

Control of cell–cell forces and collective cell dynamics by the intercellular adhesome

(2015) Elsa Bazellières et al.   NATURE CELL BIOLOGY

Myosin-II-mediated cell shape changes and cell intercalation contribute to primitive streak formation

(2015) Emil Rozbicki et al.   NATURE CELL BIOLOGY

Unjamming and cell shape in the asthmatic airway epithelium

(2015) Jin-Ah Park et al.   NATURE MATERIALS

Active swarms on a sphere

(2015) Rastko Sknepnek et al.   PHYSICAL REVIEW E

Emergence of homeostatic epithelial packing and stress dissipation through divisions oriented along the long cell axis

(2015) Tom P. J. Wyatt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interplay of cell dynamics and epithelial tension during morphogenesis of the Drosophila pupal wing

(2015) Raphaël Etournay et al.   eLife

Intercellular Stress Reconstitution from Traction Force Data

(2014) Juliane Zimmermann et al.   BIOPHYSICAL JOURNAL

Vertex Models of Epithelial Morphogenesis

(2014) Alexander G. Fletcher et al.   BIOPHYSICAL JOURNAL

The roles and regulation of multicellular rosette structures during morphogenesis

(2014) M. J. Harding et al.   DEVELOPMENT

Rigidity sensing and adaptation through regulation of integrin types

(2014) Alberto Elosegui-Artola et al.   NATURE MATERIALS

Forces driving epithelial wound healing

(2014) Agustí Brugués et al.   Nature Physics

Physical influences of the extracellular environment on cell migration

(2014) Guillaume Charras et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Bubbly vertex dynamics: A dynamical and geometrical model for epithelial tissues with curved cell shapes

(2014) Yukitaka Ishimoto et al.   PHYSICAL REVIEW E

Energy barriers and cell migration in densely packed tissues

(2014) Dapeng Bi et al.   Soft Matter

Emergence of collective modes and tri-dimensional structures from epithelial confinement

(2014) M. Deforet et al.   Nature Communications

Stress distributions and cell flows in a growing cell aggregate

(2014) M. Delarue et al.   Interface Focus

The Intestinal Crypt, A Prototype Stem Cell Compartment

(2013) Hans Clevers   CELL

Three-Dimensional Epithelial Morphogenesis in the Developing Drosophila Egg

(2013) Miriam Osterfield et al.   DEVELOPMENTAL CELL

Collective migration and cell jamming

(2013) Monirosadat Sadati et al.   DIFFERENTIATION

Propulsion and navigation within the advancing monolayer sheet

(2013) Jae Hun Kim et al.   NATURE MATERIALS

Implementing vertex dynamics models of cell populations in biology within a consistent computational framework

(2013) Alexander G. Fletcher et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

Hydrodynamics of soft active matter

(2013) M. C. Marchetti et al.   REVIEWS OF MODERN PHYSICS

Mechanics of Epithelial Tissue Homeostasis and Morphogenesis

(2013) C. Guillot et al.   SCIENCE

A continuum model of epithelial spreading

(2013) Michael H. Köpf et al.   Soft Matter

Collective Cell Motion in an Epithelial Sheet Can Be Quantitatively Described by a Stochastic Interacting Particle Model

(2013) Néstor Sepúlveda et al.   PLoS Computational Biology

Chaste: An Open Source C++ Library for Computational Physiology and Biology

(2013) Gary R. Mirams et al.   PLoS Computational Biology

Cellular Potts Modeling of Tumor Growth, Tumor Invasion, and Tumor Evolution

(2013) András Szabó et al.   Frontiers in Oncology

Modeling cell proliferation for simulating three-dimensional tissue morphogenesis based on a reversible network reconnection framework

(2012) Satoru Okuda et al.   Biomechanics and Modeling in Mechanobiology

On the biomechanics of stem cell niche formation in the gut - modelling growing organoids

(2012) Peter Buske et al.   FEBS Journal

Mechanical waves during tissue expansion

(2012) Xavier Serra-Picamal et al.   Nature Physics

Mechanical Control of Morphogenesis by Fat/Dachsous/Four-Jointed Planar Cell Polarity Pathway

(2012) F. Bosveld et al.   SCIENCE

The mechanics behind cell polarity

(2012) Atef Asnacios et al.   TRENDS IN CELL BIOLOGY

Force Generation, Transmission, and Integration during Cell and Tissue Morphogenesis

(2011) Thomas Lecuit et al.   Annual Review of Cell and Developmental Biology

Planar Cell Polarity and the Developmental Control of Cell Behavior in Vertebrate Embryos

(2011) John B. Wallingford   Annual Review of Cell and Developmental Biology

Collective cell guidance by cooperative intercellular forces

(2011) Dhananjay T. Tambe et al.   NATURE MATERIALS

Active jamming: Self-propelled soft particles at high density

(2011) Silke Henkes et al.   PHYSICAL REVIEW E

Correlating Cell Behavior with Tissue Topology in Embryonic Epithelia

(2011) Sebastian A. Sandersius et al.   PLoS One

Glass-like dynamics of collective cell migration

(2011) T. E. Angelini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plithotaxis and emergent dynamics in collective cellular migration

(2011) Xavier Trepat et al.   TRENDS IN CELL BIOLOGY

A Comprehensive Model of the Spatio-Temporal Stem Cell and Tissue Organisation in the Intestinal Crypt

(2011) Peter Buske et al.   PLoS Computational Biology

Crawling Cells Can Close Wounds without Purse Strings or Signaling

(2011) Pilhwa Lee et al.   PLoS Computational Biology

Velocity Fields in a Collectively Migrating Epithelium

(2010) L. Petitjean et al.   BIOPHYSICAL JOURNAL

Generalized Voronoi Tessellation as a Model of Two-dimensional Cell Tissue Dynamics

(2010) Martin Bock et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Exploring the effects of mechanical feedback on epithelial topology

(2010) T. Aegerter-Wilmsen et al.   DEVELOPMENT

Mechanics and remodelling of cell packings in epithelia

(2010) D. B. Staple et al.   EUROPEAN PHYSICAL JOURNAL E

A Unified Interpretation of Stress in Molecular Systems

(2010) Nikhil Chandra Admal et al.   JOURNAL OF ELASTICITY

What makes cells move: requirements and obstacles for spontaneous cell motility

(2010) Fabien Binamé et al.   Molecular BioSystems

Fast, high-contrast imaging of animal development with scanned light sheet–based structured-illumination microscopy

(2010) Philipp J Keller et al.   NATURE METHODS

Coaction of intercellular adhesion and cortical tension specifies tissue surface tension

(2010) M. Lisa Manning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Collective cell migration in development

(2009) C. J. Weijer   JOURNAL OF CELL SCIENCE

Mechanisms of collective cell migration at a glance

(2009) O. Ilina et al.   JOURNAL OF CELL SCIENCE

Cell shape changes indicate a role for extrinsic tensile forces in Drosophila germ-band extension

(2009) Lucy C. Butler et al.   NATURE CELL BIOLOGY

Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation

(2009) Guy B Blanchard et al.   NATURE METHODS

Physical forces during collective cell migration

(2009) Xavier Trepat et al.   Nature Physics

Modeling collective motion: variations on the Vicsek model

(2008) H. Chaté et al.   EUROPEAN PHYSICAL JOURNAL B

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE